miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 14018 0.67 0.535313
Target:  5'- ---cCGCCUGgaccuGCGCAuCACGCCGgacauccuGGCc -3'
miRNA:   3'- cauuGCGGAC-----CGCGUuGUGCGGU--------UCG- -5'
11910 5' -54.3 NC_003278.1 + 8049 0.67 0.535313
Target:  5'- ---cUGCUcGGCGCcuGGCugGCCAccGGCa -3'
miRNA:   3'- cauuGCGGaCCGCG--UUGugCGGU--UCG- -5'
11910 5' -54.3 NC_003278.1 + 23282 0.67 0.535313
Target:  5'- cUGAUGCCcuUGGCGau-CACGUCGAcGCu -3'
miRNA:   3'- cAUUGCGG--ACCGCguuGUGCGGUU-CG- -5'
11910 5' -54.3 NC_003278.1 + 21296 0.67 0.535313
Target:  5'- cGUcuCGCCgGGCGCG-C-CGCC-GGCg -3'
miRNA:   3'- -CAuuGCGGaCCGCGUuGuGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 15514 0.67 0.535313
Target:  5'- --cAUGCC-GG-GCAugGCGCCGAGg -3'
miRNA:   3'- cauUGCGGaCCgCGUugUGCGGUUCg -5'
11910 5' -54.3 NC_003278.1 + 21497 0.67 0.535313
Target:  5'- -gGAUGUCcGGCGUGAUGCGCaggucCAGGCg -3'
miRNA:   3'- caUUGCGGaCCGCGUUGUGCG-----GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 6524 0.67 0.535313
Target:  5'- cGUcAUGCuCUGGCGCAuCgAUGCC-GGCg -3'
miRNA:   3'- -CAuUGCG-GACCGCGUuG-UGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 21636 0.67 0.524183
Target:  5'- -gGGCGaCCUGG-GCAAgaGCGCC-GGCg -3'
miRNA:   3'- caUUGC-GGACCgCGUUg-UGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 19150 0.67 0.524183
Target:  5'- -gAugGagUGGCGCgAACGCGcCCGGGUa -3'
miRNA:   3'- caUugCggACCGCG-UUGUGC-GGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 8412 0.67 0.524183
Target:  5'- gGUGGCGCCgcaGaGCGCGuuugugcauuGCGCGUacauCGAGCg -3'
miRNA:   3'- -CAUUGCGGa--C-CGCGU----------UGUGCG----GUUCG- -5'
11910 5' -54.3 NC_003278.1 + 30012 0.68 0.513143
Target:  5'- cGUAACGCUgguugucGaGCGCgGACACGUCGcGCg -3'
miRNA:   3'- -CAUUGCGGa------C-CGCG-UUGUGCGGUuCG- -5'
11910 5' -54.3 NC_003278.1 + 26290 0.68 0.513143
Target:  5'- -cAGCGCCUuGUGUA--GCGCCGGGUc -3'
miRNA:   3'- caUUGCGGAcCGCGUugUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 30661 0.68 0.513143
Target:  5'- ----aGCCUgaccGGCGCGGCaACGCCGGaacuGCa -3'
miRNA:   3'- cauugCGGA----CCGCGUUG-UGCGGUU----CG- -5'
11910 5' -54.3 NC_003278.1 + 2546 0.68 0.513143
Target:  5'- cGUGccGCGCaCUGGC-CGACaccGCGCC-GGCg -3'
miRNA:   3'- -CAU--UGCG-GACCGcGUUG---UGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 20459 0.68 0.513143
Target:  5'- -cAGCGC--GGCGCGaucuucaaggACAuCGCCGGGCa -3'
miRNA:   3'- caUUGCGgaCCGCGU----------UGU-GCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 6350 0.68 0.513143
Target:  5'- -gAACGCCuaUGaGCuGCAGCuCGCCcAGCu -3'
miRNA:   3'- caUUGCGG--AC-CG-CGUUGuGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 22066 0.68 0.512044
Target:  5'- -cGGCGUgcugcugccggagCUGGCcgGCAGCGCGUUGAGCc -3'
miRNA:   3'- caUUGCG-------------GACCG--CGUUGUGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 18779 0.68 0.502199
Target:  5'- aGUcGCGCaguUGGCgGCggUACGCCugcAGCg -3'
miRNA:   3'- -CAuUGCGg--ACCG-CGuuGUGCGGu--UCG- -5'
11910 5' -54.3 NC_003278.1 + 32161 0.68 0.481695
Target:  5'- -cGACGCCcaguucgaUGGCGCAugAgGCCuacacauucuggacuGGCg -3'
miRNA:   3'- caUUGCGG--------ACCGCGUugUgCGGu--------------UCG- -5'
11910 5' -54.3 NC_003278.1 + 22826 0.68 0.480627
Target:  5'- -cGGCGCUggcgGGCcugccgauccuGCAGCugGaCCAGGCc -3'
miRNA:   3'- caUUGCGGa---CCG-----------CGUUGugC-GGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.