miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11910 5' -54.3 NC_003278.1 + 10175 0.66 0.638108
Target:  5'- gGUAcCGcCCUGGUauccGCAGCAgCGCCAAc- -3'
miRNA:   3'- -CAUuGC-GGACCG----CGUUGU-GCGGUUcg -5'
11910 5' -54.3 NC_003278.1 + 23637 0.66 0.603514
Target:  5'- -cGGCGCC-GGCccGCGGCgAUGCCcaAGGCa -3'
miRNA:   3'- caUUGCGGaCCG--CGUUG-UGCGG--UUCG- -5'
11910 5' -54.3 NC_003278.1 + 5019 0.66 0.592023
Target:  5'- --cGCGaCCUGGgugaGCAACuCGgCGAGCa -3'
miRNA:   3'- cauUGC-GGACCg---CGUUGuGCgGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 20332 0.66 0.603514
Target:  5'- ---cCGCCUGG-GCAcguccaagGCGguaGCCAAGCu -3'
miRNA:   3'- cauuGCGGACCgCGU--------UGUg--CGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 25274 0.67 0.580569
Target:  5'- -cGGCGCUUGaCGaCGACACGCUcGGUc -3'
miRNA:   3'- caUUGCGGACcGC-GUUGUGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 8049 0.67 0.535313
Target:  5'- ---cUGCUcGGCGCcuGGCugGCCAccGGCa -3'
miRNA:   3'- cauuGCGGaCCGCG--UUGugCGGU--UCG- -5'
11910 5' -54.3 NC_003278.1 + 21636 0.67 0.524183
Target:  5'- -gGGCGaCCUGG-GCAAgaGCGCC-GGCg -3'
miRNA:   3'- caUUGC-GGACCgCGUUg-UGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 19150 0.67 0.524183
Target:  5'- -gAugGagUGGCGCgAACGCGcCCGGGUa -3'
miRNA:   3'- caUugCggACCGCG-UUGUGC-GGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 6524 0.67 0.535313
Target:  5'- cGUcAUGCuCUGGCGCAuCgAUGCC-GGCg -3'
miRNA:   3'- -CAuUGCG-GACCGCGUuG-UGCGGuUCG- -5'
11910 5' -54.3 NC_003278.1 + 32382 0.67 0.569161
Target:  5'- -cAGCGaCUGGCGCAGCcugaACGaCCucGCc -3'
miRNA:   3'- caUUGCgGACCGCGUUG----UGC-GGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 14018 0.67 0.535313
Target:  5'- ---cCGCCUGgaccuGCGCAuCACGCCGgacauccuGGCc -3'
miRNA:   3'- cauuGCGGAC-----CGCGUuGUGCGGU--------UCG- -5'
11910 5' -54.3 NC_003278.1 + 21474 0.67 0.535313
Target:  5'- -cGGCGCCggccaGGC-CGGCcCGCUggGCg -3'
miRNA:   3'- caUUGCGGa----CCGcGUUGuGCGGuuCG- -5'
11910 5' -54.3 NC_003278.1 + 10356 0.67 0.546525
Target:  5'- ---uCGCCaacGGCGagcuGCugGCCGAGUg -3'
miRNA:   3'- cauuGCGGa--CCGCgu--UGugCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 9362 0.67 0.556679
Target:  5'- --uGCGCCgaGGC-CAGCgcgugagccuucuGCGCCAGGUg -3'
miRNA:   3'- cauUGCGGa-CCGcGUUG-------------UGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 13615 0.67 0.569161
Target:  5'- -gAGCGCCUGGCcGCcgaAGCccugGCGCagauuGAGCg -3'
miRNA:   3'- caUUGCGGACCG-CG---UUG----UGCGg----UUCG- -5'
11910 5' -54.3 NC_003278.1 + 29829 0.67 0.569161
Target:  5'- --cGCGCCggcGGCGC----CGCCAAGUc -3'
miRNA:   3'- cauUGCGGa--CCGCGuuguGCGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 30332 0.67 0.569161
Target:  5'- -gAGCGCCaGGaCGCcgucaACGCCGAcGCg -3'
miRNA:   3'- caUUGCGGaCC-GCGuug--UGCGGUU-CG- -5'
11910 5' -54.3 NC_003278.1 + 8363 0.67 0.577141
Target:  5'- --uGCGCCUGGUcugcuaccagcgcuGCGGCGCccgcuuccGCCGcAGCg -3'
miRNA:   3'- cauUGCGGACCG--------------CGUUGUG--------CGGU-UCG- -5'
11910 5' -54.3 NC_003278.1 + 17183 0.67 0.579425
Target:  5'- -cAACGCCgccacugUGGUGguGCGggugaaGCCGGGCg -3'
miRNA:   3'- caUUGCGG-------ACCGCguUGUg-----CGGUUCG- -5'
11910 5' -54.3 NC_003278.1 + 10798 0.67 0.585145
Target:  5'- ----aGCCUGGCGCucccgaagucagcuACGCGC--AGCg -3'
miRNA:   3'- cauugCGGACCGCGu-------------UGUGCGguUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.