miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11914 3' -61.1 NC_003278.1 + 2742 0.69 0.178404
Target:  5'- uUUGgcAGgGCCAcgguGGCGCGGGUCC-GCGa -3'
miRNA:   3'- -AAC--UCgCGGU----CCGCGCCUAGGuCGCg -5'
11914 3' -61.1 NC_003278.1 + 13663 0.69 0.173595
Target:  5'- -cGGGCGCgCAGGCGCGccgCCuuguuGCGUu -3'
miRNA:   3'- aaCUCGCG-GUCCGCGCcuaGGu----CGCG- -5'
11914 3' -61.1 NC_003278.1 + 23173 0.69 0.168902
Target:  5'- -aGAGCGCCcuGCGCGccgCCcGCGCc -3'
miRNA:   3'- aaCUCGCGGucCGCGCcuaGGuCGCG- -5'
11914 3' -61.1 NC_003278.1 + 32952 0.69 0.164323
Target:  5'- gUUGGGUucgaccaauccGCC-GGCGCGGugucggCCAGUGCg -3'
miRNA:   3'- -AACUCG-----------CGGuCCGCGCCua----GGUCGCG- -5'
11914 3' -61.1 NC_003278.1 + 29896 0.69 0.159856
Target:  5'- -cGAGgGCCuGGCGCuugaGGAUCgCGucGCGCa -3'
miRNA:   3'- aaCUCgCGGuCCGCG----CCUAG-GU--CGCG- -5'
11914 3' -61.1 NC_003278.1 + 13612 0.69 0.159856
Target:  5'- cUUGAGCGCCuGGcCGCcGAagCCcuGGCGCa -3'
miRNA:   3'- -AACUCGCGGuCC-GCGcCUa-GG--UCGCG- -5'
11914 3' -61.1 NC_003278.1 + 31741 0.69 0.159856
Target:  5'- -cGAGCGCCuGGC-CGGuGUCCcGgGCa -3'
miRNA:   3'- aaCUCGCGGuCCGcGCC-UAGGuCgCG- -5'
11914 3' -61.1 NC_003278.1 + 26567 0.7 0.151248
Target:  5'- --cGGCGCCAGGUggucaGCGcGAUCauCGGCGCc -3'
miRNA:   3'- aacUCGCGGUCCG-----CGC-CUAG--GUCGCG- -5'
11914 3' -61.1 NC_003278.1 + 2917 0.7 0.135287
Target:  5'- aUGAugGCGCCcgAGGUGUcGGUCCAGCGg -3'
miRNA:   3'- aACU--CGCGG--UCCGCGcCUAGGUCGCg -5'
11914 3' -61.1 NC_003278.1 + 21285 0.71 0.124349
Target:  5'- aUGGGgucagccgucuCGCCGGGCGCGccgCCGGCGUc -3'
miRNA:   3'- aACUC-----------GCGGUCCGCGCcuaGGUCGCG- -5'
11914 3' -61.1 NC_003278.1 + 21650 0.71 0.120888
Target:  5'- -aGAGCGCCGgcgccaucGGUGCccuggugcucGGcgCCAGCGCc -3'
miRNA:   3'- aaCUCGCGGU--------CCGCG----------CCuaGGUCGCG- -5'
11914 3' -61.1 NC_003278.1 + 29233 0.71 0.120888
Target:  5'- -aGaAGCGCCugcucGGCGUGGccgCCGGUGCg -3'
miRNA:   3'- aaC-UCGCGGu----CCGCGCCua-GGUCGCG- -5'
11914 3' -61.1 NC_003278.1 + 16171 0.73 0.0787
Target:  5'- -aGGGCGCCgcgcuGGGUGCGGAa--GGCGCg -3'
miRNA:   3'- aaCUCGCGG-----UCCGCGCCUaggUCGCG- -5'
11914 3' -61.1 NC_003278.1 + 12839 0.74 0.066118
Target:  5'- cUGAGCG---GGCGCGGAugcugagcacgUCCGGCGCg -3'
miRNA:   3'- aACUCGCgguCCGCGCCU-----------AGGUCGCG- -5'
11914 3' -61.1 NC_003278.1 + 16075 0.75 0.058832
Target:  5'- gUGAGCGCgCGGGUGgGGuugCCGGCGg -3'
miRNA:   3'- aACUCGCG-GUCCGCgCCua-GGUCGCg -5'
11914 3' -61.1 NC_003278.1 + 4382 0.76 0.049196
Target:  5'- cUGGGCGCCAGGCGgguguuuguccgcUGGG-CCAGgGCg -3'
miRNA:   3'- aACUCGCGGUCCGC-------------GCCUaGGUCgCG- -5'
11914 3' -61.1 NC_003278.1 + 6885 0.78 0.033614
Target:  5'- gUGGGCGCCGGGUuCGuuGUCCAGCGCc -3'
miRNA:   3'- aACUCGCGGUCCGcGCc-UAGGUCGCG- -5'
11914 3' -61.1 NC_003278.1 + 31588 1.08 0.000142
Target:  5'- cUUGAGCGCCAGGCGCGGAUCCAGCGCu -3'
miRNA:   3'- -AACUCGCGGUCCGCGCCUAGGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.