Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11917 | 3' | -55.5 | NC_003278.1 | + | 13413 | 0.66 | 0.552153 |
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Target: 5'- aUCaGCGUCGA--CGCCuGGGCAUGGa -3' miRNA: 3'- -GGcCGUAGCUacGCGGuCUCGUACUg -5' |
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| 11917 | 3' | -55.5 | NC_003278.1 | + | 23505 | 0.66 | 0.552153 |
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Target: 5'- -gGGCGUCGcgGuCGCCGuuGGGCggGAUc -3' miRNA: 3'- ggCCGUAGCuaC-GCGGU--CUCGuaCUG- -5' |
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| 11917 | 3' | -55.5 | NC_003278.1 | + | 25103 | 0.66 | 0.56331 |
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Target: 5'- gCCgGGCGccugaUCuGcgGCGUCucGAGCAUGACg -3' miRNA: 3'- -GG-CCGU-----AG-CuaCGCGGu-CUCGUACUG- -5' |
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| 11917 | 3' | -55.5 | NC_003278.1 | + | 21462 | 0.66 | 0.56331 |
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Target: 5'- gUCGcCGUCGAUcGuCGCCAGGcCGUGGCg -3' miRNA: 3'- -GGCcGUAGCUA-C-GCGGUCUcGUACUG- -5' |
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| 11917 | 3' | -55.5 | NC_003278.1 | + | 27033 | 0.66 | 0.574527 |
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Target: 5'- gUGGCGaCGAUggcGUGCCAGAuGC-UGACc -3' miRNA: 3'- gGCCGUaGCUA---CGCGGUCU-CGuACUG- -5' |
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| 11917 | 3' | -55.5 | NC_003278.1 | + | 14630 | 0.66 | 0.585794 |
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Target: 5'- aCCgGGCAggcgaaugcCGAUgGUGCC-GAGCAUGAa -3' miRNA: 3'- -GG-CCGUa--------GCUA-CGCGGuCUCGUACUg -5' |
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| 11917 | 3' | -55.5 | NC_003278.1 | + | 29384 | 0.66 | 0.585794 |
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Target: 5'- -gGGCGacguggCGGUGCGCgGcGGCGUGAUc -3' miRNA: 3'- ggCCGUa-----GCUACGCGgUcUCGUACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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