Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 20273 | 0.69 | 0.368972 |
Target: 5'- cUCGGCAaCGcugGCGuCCAGGGCAgcaUGGCc -3' miRNA: 3'- -GGCCGUaGCua-CGC-GGUCUCGU---ACUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 13258 | 0.69 | 0.387238 |
Target: 5'- gCGGCcgucGUCGAUGCGCUuGAGCucgaggGAg -3' miRNA: 3'- gGCCG----UAGCUACGCGGuCUCGua----CUg -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 27517 | 0.69 | 0.387238 |
Target: 5'- -gGGCAUCGAcugGgGCCAGGGa--GACg -3' miRNA: 3'- ggCCGUAGCUa--CgCGGUCUCguaCUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 32361 | 0.69 | 0.387238 |
Target: 5'- cCUGGCAcUGGUGCgaGCCGGcAGCGacUGGCg -3' miRNA: 3'- -GGCCGUaGCUACG--CGGUC-UCGU--ACUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 9606 | 0.69 | 0.387238 |
Target: 5'- gCGGCAgcaGcUGCGCCAG-GCGcUGGCc -3' miRNA: 3'- gGCCGUag-CuACGCGGUCuCGU-ACUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 20303 | 0.69 | 0.396591 |
Target: 5'- nCCGGCAccUCGAUGCGCUcu-GUucUGACc -3' miRNA: 3'- -GGCCGU--AGCUACGCGGucuCGu-ACUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 5710 | 0.68 | 0.425507 |
Target: 5'- gCCGGCgcggcuguuGUCGcUGCggucgGCCucGAGCAUGACc -3' miRNA: 3'- -GGCCG---------UAGCuACG-----CGGu-CUCGUACUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 12287 | 0.68 | 0.425507 |
Target: 5'- gCCGGCcccuggCGA-GCGCguagcuGAGCGUGGCg -3' miRNA: 3'- -GGCCGua----GCUaCGCGgu----CUCGUACUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 29155 | 0.68 | 0.435421 |
Target: 5'- uCC-GCAUCGAU-CGCCccgacgacgAGAGCGUGAa -3' miRNA: 3'- -GGcCGUAGCUAcGCGG---------UCUCGUACUg -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 17244 | 0.68 | 0.445468 |
Target: 5'- gCGGuCAUCGGcgGCGUCAGcGCcgAUGGCa -3' miRNA: 3'- gGCC-GUAGCUa-CGCGGUCuCG--UACUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 15129 | 0.67 | 0.476359 |
Target: 5'- uCCGGCAUCuuaccUGCuGCCAGAGgCGguaccGGCa -3' miRNA: 3'- -GGCCGUAGcu---ACG-CGGUCUC-GUa----CUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 23246 | 0.67 | 0.486891 |
Target: 5'- cCCGGUAU-GAcGcCGCCGuGGGUAUGACc -3' miRNA: 3'- -GGCCGUAgCUaC-GCGGU-CUCGUACUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 19758 | 0.67 | 0.497532 |
Target: 5'- aCCGGCAUggCGGcacGCGCgAcGGGCAUGuACa -3' miRNA: 3'- -GGCCGUA--GCUa--CGCGgU-CUCGUAC-UG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 3210 | 0.67 | 0.505042 |
Target: 5'- cUCGGCAUCGAggauggugacgaucUgGCGCCAGAuGCGg--- -3' miRNA: 3'- -GGCCGUAGCU--------------A-CGCGGUCU-CGUacug -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 22514 | 0.67 | 0.507197 |
Target: 5'- gCGGCcUCGAg--GCCGaucaguuGAGCGUGACa -3' miRNA: 3'- gGCCGuAGCUacgCGGU-------CUCGUACUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 20517 | 0.67 | 0.508276 |
Target: 5'- cCCGGC---GGUGaCGCCGGAGU-UGGCc -3' miRNA: 3'- -GGCCGuagCUAC-GCGGUCUCGuACUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 7264 | 0.67 | 0.508276 |
Target: 5'- aCCaGcCAUCGAUcaGCGCCAGgucgaagccgcgGGCAUGGg -3' miRNA: 3'- -GGcC-GUAGCUA--CGCGGUC------------UCGUACUg -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 33198 | 0.67 | 0.530048 |
Target: 5'- gCCGGUGcUCGAcG-GCCGGGGCAUccucGACu -3' miRNA: 3'- -GGCCGU-AGCUaCgCGGUCUCGUA----CUG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 32751 | 0.66 | 0.541063 |
Target: 5'- uCUGGCGUCGcgcagcugGUGCGCCAGuucuucccgGGgGUGcGCa -3' miRNA: 3'- -GGCCGUAGC--------UACGCGGUC---------UCgUAC-UG- -5' |
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11917 | 3' | -55.5 | NC_003278.1 | + | 31580 | 0.66 | 0.541063 |
Target: 5'- aUCGGCAgcUUGA-GCGCCAG-GCGcgGAUc -3' miRNA: 3'- -GGCCGU--AGCUaCGCGGUCuCGUa-CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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