miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11917 3' -55.5 NC_003278.1 + 28995 1.12 0.000312
Target:  5'- gCCGGCAUCGAUGCGCCAGAGCAUGACg -3'
miRNA:   3'- -GGCCGUAGCUACGCGGUCUCGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 15969 0.76 0.132524
Target:  5'- gCCGGCGUUGcugaggcgcGUGCGCaguugcugCAGGGCGUGGCu -3'
miRNA:   3'- -GGCCGUAGC---------UACGCG--------GUCUCGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 13824 0.74 0.186203
Target:  5'- aCGGuUGUCGAuggugauggccUGCGCCGGGGCGcUGGCg -3'
miRNA:   3'- gGCC-GUAGCU-----------ACGCGGUCUCGU-ACUG- -5'
11917 3' -55.5 NC_003278.1 + 27096 0.73 0.213763
Target:  5'- aUGGcCAUgGAUGCGCC-GAGCAggcUGGCg -3'
miRNA:   3'- gGCC-GUAgCUACGCGGuCUCGU---ACUG- -5'
11917 3' -55.5 NC_003278.1 + 32970 0.73 0.21968
Target:  5'- gCCGGCG-CGGUGUcgGCCAGuGCGcGGCa -3'
miRNA:   3'- -GGCCGUaGCUACG--CGGUCuCGUaCUG- -5'
11917 3' -55.5 NC_003278.1 + 3466 0.73 0.231932
Target:  5'- gCCGGCcgCGGcuCGCCAGAcGCggGACg -3'
miRNA:   3'- -GGCCGuaGCUacGCGGUCU-CGuaCUG- -5'
11917 3' -55.5 NC_003278.1 + 17078 0.72 0.244754
Target:  5'- gCCGGUAUCGucuUGCuggaaugaGCCGGcgaagcgcAGCAUGACg -3'
miRNA:   3'- -GGCCGUAGCu--ACG--------CGGUC--------UCGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 20213 0.72 0.250714
Target:  5'- gCCGGCGUCGGccGCgaguacgGCCAGAGCcUGGa -3'
miRNA:   3'- -GGCCGUAGCUa-CG-------CGGUCUCGuACUg -5'
11917 3' -55.5 NC_003278.1 + 14274 0.72 0.25816
Target:  5'- gCCGGCAggUCGAUGC-CCAGguAGCccagGACg -3'
miRNA:   3'- -GGCCGU--AGCUACGcGGUC--UCGua--CUG- -5'
11917 3' -55.5 NC_003278.1 + 22064 0.72 0.265085
Target:  5'- cCCGGCGU-GcUGCuGCCGGAGC-UGGCc -3'
miRNA:   3'- -GGCCGUAgCuACG-CGGUCUCGuACUG- -5'
11917 3' -55.5 NC_003278.1 + 27186 0.72 0.265085
Target:  5'- gCGGCAgCGAUGUagGCCAGGGC--GGCg -3'
miRNA:   3'- gGCCGUaGCUACG--CGGUCUCGuaCUG- -5'
11917 3' -55.5 NC_003278.1 + 12345 0.71 0.286762
Target:  5'- cUCGGCG-CGGgcgGCGCgCAGGGCGcucUGGCg -3'
miRNA:   3'- -GGCCGUaGCUa--CGCG-GUCUCGU---ACUG- -5'
11917 3' -55.5 NC_003278.1 + 4861 0.71 0.286762
Target:  5'- uCCGGCGUUGccGCGCCGGucaGGCuUGGa -3'
miRNA:   3'- -GGCCGUAGCuaCGCGGUC---UCGuACUg -5'
11917 3' -55.5 NC_003278.1 + 18878 0.71 0.301975
Target:  5'- -gGGCGUCGGUGuCGUC-GAGC-UGGCg -3'
miRNA:   3'- ggCCGUAGCUAC-GCGGuCUCGuACUG- -5'
11917 3' -55.5 NC_003278.1 + 12633 0.71 0.301975
Target:  5'- cCUGaGCAUCccccugcaGAUggGCGCCAGcGCAUGACa -3'
miRNA:   3'- -GGC-CGUAG--------CUA--CGCGGUCuCGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 3234 0.7 0.325948
Target:  5'- gCGGCGUCGAUauCGCCGG-GCAgcGGCa -3'
miRNA:   3'- gGCCGUAGCUAc-GCGGUCuCGUa-CUG- -5'
11917 3' -55.5 NC_003278.1 + 6999 0.7 0.325948
Target:  5'- aCGGCGUCGAUGCcGUggugCAGcAGCGcgaUGGCg -3'
miRNA:   3'- gGCCGUAGCUACG-CG----GUC-UCGU---ACUG- -5'
11917 3' -55.5 NC_003278.1 + 28275 0.7 0.325948
Target:  5'- gCCGGCcgCGAUcuucucaagGCGCCAGGcccGCAgcucgcgguUGACg -3'
miRNA:   3'- -GGCCGuaGCUA---------CGCGGUCU---CGU---------ACUG- -5'
11917 3' -55.5 NC_003278.1 + 21881 0.7 0.341847
Target:  5'- aUGGgAUCGGuacccgcucaaucUGCGCCAGGGCuucGGCg -3'
miRNA:   3'- gGCCgUAGCU-------------ACGCGGUCUCGua-CUG- -5'
11917 3' -55.5 NC_003278.1 + 32522 0.7 0.351305
Target:  5'- gCGGCcguUCGGUGauCGCCAG-GUGUGGCu -3'
miRNA:   3'- gGCCGu--AGCUAC--GCGGUCuCGUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.