miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11917 3' -55.5 NC_003278.1 + 3210 0.67 0.505042
Target:  5'- cUCGGCAUCGAggauggugacgaucUgGCGCCAGAuGCGg--- -3'
miRNA:   3'- -GGCCGUAGCU--------------A-CGCGGUCU-CGUacug -5'
11917 3' -55.5 NC_003278.1 + 3234 0.7 0.325948
Target:  5'- gCGGCGUCGAUauCGCCGG-GCAgcGGCa -3'
miRNA:   3'- gGCCGUAGCUAc-GCGGUCuCGUa-CUG- -5'
11917 3' -55.5 NC_003278.1 + 3466 0.73 0.231932
Target:  5'- gCCGGCcgCGGcuCGCCAGAcGCggGACg -3'
miRNA:   3'- -GGCCGuaGCUacGCGGUCU-CGuaCUG- -5'
11917 3' -55.5 NC_003278.1 + 4861 0.71 0.286762
Target:  5'- uCCGGCGUUGccGCGCCGGucaGGCuUGGa -3'
miRNA:   3'- -GGCCGUAGCuaCGCGGUC---UCGuACUg -5'
11917 3' -55.5 NC_003278.1 + 5710 0.68 0.425507
Target:  5'- gCCGGCgcggcuguuGUCGcUGCggucgGCCucGAGCAUGACc -3'
miRNA:   3'- -GGCCG---------UAGCuACG-----CGGu-CUCGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 6999 0.7 0.325948
Target:  5'- aCGGCGUCGAUGCcGUggugCAGcAGCGcgaUGGCg -3'
miRNA:   3'- gGCCGUAGCUACG-CG----GUC-UCGU---ACUG- -5'
11917 3' -55.5 NC_003278.1 + 7264 0.67 0.508276
Target:  5'- aCCaGcCAUCGAUcaGCGCCAGgucgaagccgcgGGCAUGGg -3'
miRNA:   3'- -GGcC-GUAGCUA--CGCGGUC------------UCGUACUg -5'
11917 3' -55.5 NC_003278.1 + 9606 0.69 0.387238
Target:  5'- gCGGCAgcaGcUGCGCCAG-GCGcUGGCc -3'
miRNA:   3'- gGCCGUag-CuACGCGGUCuCGU-ACUG- -5'
11917 3' -55.5 NC_003278.1 + 12287 0.68 0.425507
Target:  5'- gCCGGCcccuggCGA-GCGCguagcuGAGCGUGGCg -3'
miRNA:   3'- -GGCCGua----GCUaCGCGgu----CUCGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 12345 0.71 0.286762
Target:  5'- cUCGGCG-CGGgcgGCGCgCAGGGCGcucUGGCg -3'
miRNA:   3'- -GGCCGUaGCUa--CGCG-GUCUCGU---ACUG- -5'
11917 3' -55.5 NC_003278.1 + 12633 0.71 0.301975
Target:  5'- cCUGaGCAUCccccugcaGAUggGCGCCAGcGCAUGACa -3'
miRNA:   3'- -GGC-CGUAG--------CUA--CGCGGUCuCGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 13258 0.69 0.387238
Target:  5'- gCGGCcgucGUCGAUGCGCUuGAGCucgaggGAg -3'
miRNA:   3'- gGCCG----UAGCUACGCGGuCUCGua----CUg -5'
11917 3' -55.5 NC_003278.1 + 13413 0.66 0.552153
Target:  5'- aUCaGCGUCGA--CGCCuGGGCAUGGa -3'
miRNA:   3'- -GGcCGUAGCUacGCGGuCUCGUACUg -5'
11917 3' -55.5 NC_003278.1 + 13824 0.74 0.186203
Target:  5'- aCGGuUGUCGAuggugauggccUGCGCCGGGGCGcUGGCg -3'
miRNA:   3'- gGCC-GUAGCU-----------ACGCGGUCUCGU-ACUG- -5'
11917 3' -55.5 NC_003278.1 + 14274 0.72 0.25816
Target:  5'- gCCGGCAggUCGAUGC-CCAGguAGCccagGACg -3'
miRNA:   3'- -GGCCGU--AGCUACGcGGUC--UCGua--CUG- -5'
11917 3' -55.5 NC_003278.1 + 14630 0.66 0.585794
Target:  5'- aCCgGGCAggcgaaugcCGAUgGUGCC-GAGCAUGAa -3'
miRNA:   3'- -GG-CCGUa--------GCUA-CGCGGuCUCGUACUg -5'
11917 3' -55.5 NC_003278.1 + 15129 0.67 0.476359
Target:  5'- uCCGGCAUCuuaccUGCuGCCAGAGgCGguaccGGCa -3'
miRNA:   3'- -GGCCGUAGcu---ACG-CGGUCUC-GUa----CUG- -5'
11917 3' -55.5 NC_003278.1 + 15969 0.76 0.132524
Target:  5'- gCCGGCGUUGcugaggcgcGUGCGCaguugcugCAGGGCGUGGCu -3'
miRNA:   3'- -GGCCGUAGC---------UACGCG--------GUCUCGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 17078 0.72 0.244754
Target:  5'- gCCGGUAUCGucuUGCuggaaugaGCCGGcgaagcgcAGCAUGACg -3'
miRNA:   3'- -GGCCGUAGCu--ACG--------CGGUC--------UCGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 17244 0.68 0.445468
Target:  5'- gCGGuCAUCGGcgGCGUCAGcGCcgAUGGCa -3'
miRNA:   3'- gGCC-GUAGCUa-CGCGGUCuCG--UACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.