miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11917 3' -55.5 NC_003278.1 + 18878 0.71 0.301975
Target:  5'- -gGGCGUCGGUGuCGUC-GAGC-UGGCg -3'
miRNA:   3'- ggCCGUAGCUAC-GCGGuCUCGuACUG- -5'
11917 3' -55.5 NC_003278.1 + 19758 0.67 0.497532
Target:  5'- aCCGGCAUggCGGcacGCGCgAcGGGCAUGuACa -3'
miRNA:   3'- -GGCCGUA--GCUa--CGCGgU-CUCGUAC-UG- -5'
11917 3' -55.5 NC_003278.1 + 20213 0.72 0.250714
Target:  5'- gCCGGCGUCGGccGCgaguacgGCCAGAGCcUGGa -3'
miRNA:   3'- -GGCCGUAGCUa-CG-------CGGUCUCGuACUg -5'
11917 3' -55.5 NC_003278.1 + 20273 0.69 0.368972
Target:  5'- cUCGGCAaCGcugGCGuCCAGGGCAgcaUGGCc -3'
miRNA:   3'- -GGCCGUaGCua-CGC-GGUCUCGU---ACUG- -5'
11917 3' -55.5 NC_003278.1 + 20303 0.69 0.396591
Target:  5'- nCCGGCAccUCGAUGCGCUcu-GUucUGACc -3'
miRNA:   3'- -GGCCGU--AGCUACGCGGucuCGu-ACUG- -5'
11917 3' -55.5 NC_003278.1 + 20517 0.67 0.508276
Target:  5'- cCCGGC---GGUGaCGCCGGAGU-UGGCc -3'
miRNA:   3'- -GGCCGuagCUAC-GCGGUCUCGuACUG- -5'
11917 3' -55.5 NC_003278.1 + 21462 0.66 0.56331
Target:  5'- gUCGcCGUCGAUcGuCGCCAGGcCGUGGCg -3'
miRNA:   3'- -GGCcGUAGCUA-C-GCGGUCUcGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 21881 0.7 0.341847
Target:  5'- aUGGgAUCGGuacccgcucaaucUGCGCCAGGGCuucGGCg -3'
miRNA:   3'- gGCCgUAGCU-------------ACGCGGUCUCGua-CUG- -5'
11917 3' -55.5 NC_003278.1 + 22064 0.72 0.265085
Target:  5'- cCCGGCGU-GcUGCuGCCGGAGC-UGGCc -3'
miRNA:   3'- -GGCCGUAgCuACG-CGGUCUCGuACUG- -5'
11917 3' -55.5 NC_003278.1 + 22514 0.67 0.507197
Target:  5'- gCGGCcUCGAg--GCCGaucaguuGAGCGUGACa -3'
miRNA:   3'- gGCCGuAGCUacgCGGU-------CUCGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 23246 0.67 0.486891
Target:  5'- cCCGGUAU-GAcGcCGCCGuGGGUAUGACc -3'
miRNA:   3'- -GGCCGUAgCUaC-GCGGU-CUCGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 23505 0.66 0.552153
Target:  5'- -gGGCGUCGcgGuCGCCGuuGGGCggGAUc -3'
miRNA:   3'- ggCCGUAGCuaC-GCGGU--CUCGuaCUG- -5'
11917 3' -55.5 NC_003278.1 + 25103 0.66 0.56331
Target:  5'- gCCgGGCGccugaUCuGcgGCGUCucGAGCAUGACg -3'
miRNA:   3'- -GG-CCGU-----AG-CuaCGCGGu-CUCGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 27033 0.66 0.574527
Target:  5'- gUGGCGaCGAUggcGUGCCAGAuGC-UGACc -3'
miRNA:   3'- gGCCGUaGCUA---CGCGGUCU-CGuACUG- -5'
11917 3' -55.5 NC_003278.1 + 27096 0.73 0.213763
Target:  5'- aUGGcCAUgGAUGCGCC-GAGCAggcUGGCg -3'
miRNA:   3'- gGCC-GUAgCUACGCGGuCUCGU---ACUG- -5'
11917 3' -55.5 NC_003278.1 + 27186 0.72 0.265085
Target:  5'- gCGGCAgCGAUGUagGCCAGGGC--GGCg -3'
miRNA:   3'- gGCCGUaGCUACG--CGGUCUCGuaCUG- -5'
11917 3' -55.5 NC_003278.1 + 27517 0.69 0.387238
Target:  5'- -gGGCAUCGAcugGgGCCAGGGa--GACg -3'
miRNA:   3'- ggCCGUAGCUa--CgCGGUCUCguaCUG- -5'
11917 3' -55.5 NC_003278.1 + 28275 0.7 0.325948
Target:  5'- gCCGGCcgCGAUcuucucaagGCGCCAGGcccGCAgcucgcgguUGACg -3'
miRNA:   3'- -GGCCGuaGCUA---------CGCGGUCU---CGU---------ACUG- -5'
11917 3' -55.5 NC_003278.1 + 28995 1.12 0.000312
Target:  5'- gCCGGCAUCGAUGCGCCAGAGCAUGACg -3'
miRNA:   3'- -GGCCGUAGCUACGCGGUCUCGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 29155 0.68 0.435421
Target:  5'- uCC-GCAUCGAU-CGCCccgacgacgAGAGCGUGAa -3'
miRNA:   3'- -GGcCGUAGCUAcGCGG---------UCUCGUACUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.