Results 21 - 40 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 28275 | 0.7 | 0.325948 |
Target: 5'- gCCGGCcgCGAUcuucucaagGCGCCAGGcccGCAgcucgcgguUGACg -3' miRNA: 3'- -GGCCGuaGCUA---------CGCGGUCU---CGU---------ACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 6999 | 0.7 | 0.325948 |
Target: 5'- aCGGCGUCGAUGCcGUggugCAGcAGCGcgaUGGCg -3' miRNA: 3'- gGCCGUAGCUACG-CG----GUC-UCGU---ACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 3234 | 0.7 | 0.325948 |
Target: 5'- gCGGCGUCGAUauCGCCGG-GCAgcGGCa -3' miRNA: 3'- gGCCGUAGCUAc-GCGGUCuCGUa-CUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 18878 | 0.71 | 0.301975 |
Target: 5'- -gGGCGUCGGUGuCGUC-GAGC-UGGCg -3' miRNA: 3'- ggCCGUAGCUAC-GCGGuCUCGuACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 12345 | 0.71 | 0.286762 |
Target: 5'- cUCGGCG-CGGgcgGCGCgCAGGGCGcucUGGCg -3' miRNA: 3'- -GGCCGUaGCUa--CGCG-GUCUCGU---ACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 4861 | 0.71 | 0.286762 |
Target: 5'- uCCGGCGUUGccGCGCCGGucaGGCuUGGa -3' miRNA: 3'- -GGCCGUAGCuaCGCGGUC---UCGuACUg -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 27186 | 0.72 | 0.265085 |
Target: 5'- gCGGCAgCGAUGUagGCCAGGGC--GGCg -3' miRNA: 3'- gGCCGUaGCUACG--CGGUCUCGuaCUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 14274 | 0.72 | 0.25816 |
Target: 5'- gCCGGCAggUCGAUGC-CCAGguAGCccagGACg -3' miRNA: 3'- -GGCCGU--AGCUACGcGGUC--UCGua--CUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 5710 | 0.68 | 0.425507 |
Target: 5'- gCCGGCgcggcuguuGUCGcUGCggucgGCCucGAGCAUGACc -3' miRNA: 3'- -GGCCG---------UAGCuACG-----CGGu-CUCGUACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 12287 | 0.68 | 0.425507 |
Target: 5'- gCCGGCcccuggCGA-GCGCguagcuGAGCGUGGCg -3' miRNA: 3'- -GGCCGua----GCUaCGCGgu----CUCGUACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 27033 | 0.66 | 0.574527 |
Target: 5'- gUGGCGaCGAUggcGUGCCAGAuGC-UGACc -3' miRNA: 3'- gGCCGUaGCUA---CGCGGUCU-CGuACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 25103 | 0.66 | 0.56331 |
Target: 5'- gCCgGGCGccugaUCuGcgGCGUCucGAGCAUGACg -3' miRNA: 3'- -GG-CCGU-----AG-CuaCGCGGu-CUCGUACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 21462 | 0.66 | 0.56331 |
Target: 5'- gUCGcCGUCGAUcGuCGCCAGGcCGUGGCg -3' miRNA: 3'- -GGCcGUAGCUA-C-GCGGUCUcGUACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 23505 | 0.66 | 0.552153 |
Target: 5'- -gGGCGUCGcgGuCGCCGuuGGGCggGAUc -3' miRNA: 3'- ggCCGUAGCuaC-GCGGU--CUCGuaCUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 31580 | 0.66 | 0.541063 |
Target: 5'- aUCGGCAgcUUGA-GCGCCAG-GCGcgGAUc -3' miRNA: 3'- -GGCCGU--AGCUaCGCGGUCuCGUa-CUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 32751 | 0.66 | 0.541063 |
Target: 5'- uCUGGCGUCGcgcagcugGUGCGCCAGuucuucccgGGgGUGcGCa -3' miRNA: 3'- -GGCCGUAGC--------UACGCGGUC---------UCgUAC-UG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 33198 | 0.67 | 0.530048 |
Target: 5'- gCCGGUGcUCGAcG-GCCGGGGCAUccucGACu -3' miRNA: 3'- -GGCCGU-AGCUaCgCGGUCUCGUA----CUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 20517 | 0.67 | 0.508276 |
Target: 5'- cCCGGC---GGUGaCGCCGGAGU-UGGCc -3' miRNA: 3'- -GGCCGuagCUAC-GCGGUCUCGuACUG- -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 7264 | 0.67 | 0.508276 |
Target: 5'- aCCaGcCAUCGAUcaGCGCCAGgucgaagccgcgGGCAUGGg -3' miRNA: 3'- -GGcC-GUAGCUA--CGCGGUC------------UCGUACUg -5' |
|||||||
11917 | 3' | -55.5 | NC_003278.1 | + | 23246 | 0.67 | 0.486891 |
Target: 5'- cCCGGUAU-GAcGcCGCCGuGGGUAUGACc -3' miRNA: 3'- -GGCCGUAgCUaC-GCGGU-CUCGUACUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home