miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11917 3' -55.5 NC_003278.1 + 5710 0.68 0.425507
Target:  5'- gCCGGCgcggcuguuGUCGcUGCggucgGCCucGAGCAUGACc -3'
miRNA:   3'- -GGCCG---------UAGCuACG-----CGGu-CUCGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 20303 0.69 0.396591
Target:  5'- nCCGGCAccUCGAUGCGCUcu-GUucUGACc -3'
miRNA:   3'- -GGCCGU--AGCUACGCGGucuCGu-ACUG- -5'
11917 3' -55.5 NC_003278.1 + 13258 0.69 0.387238
Target:  5'- gCGGCcgucGUCGAUGCGCUuGAGCucgaggGAg -3'
miRNA:   3'- gGCCG----UAGCUACGCGGuCUCGua----CUg -5'
11917 3' -55.5 NC_003278.1 + 27517 0.69 0.387238
Target:  5'- -gGGCAUCGAcugGgGCCAGGGa--GACg -3'
miRNA:   3'- ggCCGUAGCUa--CgCGGUCUCguaCUG- -5'
11917 3' -55.5 NC_003278.1 + 32361 0.69 0.387238
Target:  5'- cCUGGCAcUGGUGCgaGCCGGcAGCGacUGGCg -3'
miRNA:   3'- -GGCCGUaGCUACG--CGGUC-UCGU--ACUG- -5'
11917 3' -55.5 NC_003278.1 + 9606 0.69 0.387238
Target:  5'- gCGGCAgcaGcUGCGCCAG-GCGcUGGCc -3'
miRNA:   3'- gGCCGUag-CuACGCGGUCuCGU-ACUG- -5'
11917 3' -55.5 NC_003278.1 + 20273 0.69 0.368972
Target:  5'- cUCGGCAaCGcugGCGuCCAGGGCAgcaUGGCc -3'
miRNA:   3'- -GGCCGUaGCua-CGC-GGUCUCGU---ACUG- -5'
11917 3' -55.5 NC_003278.1 + 32522 0.7 0.351305
Target:  5'- gCGGCcguUCGGUGauCGCCAG-GUGUGGCu -3'
miRNA:   3'- gGCCGu--AGCUAC--GCGGUCuCGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 21881 0.7 0.341847
Target:  5'- aUGGgAUCGGuacccgcucaaucUGCGCCAGGGCuucGGCg -3'
miRNA:   3'- gGCCgUAGCU-------------ACGCGGUCUCGua-CUG- -5'
11917 3' -55.5 NC_003278.1 + 3234 0.7 0.325948
Target:  5'- gCGGCGUCGAUauCGCCGG-GCAgcGGCa -3'
miRNA:   3'- gGCCGUAGCUAc-GCGGUCuCGUa-CUG- -5'
11917 3' -55.5 NC_003278.1 + 28275 0.7 0.325948
Target:  5'- gCCGGCcgCGAUcuucucaagGCGCCAGGcccGCAgcucgcgguUGACg -3'
miRNA:   3'- -GGCCGuaGCUA---------CGCGGUCU---CGU---------ACUG- -5'
11917 3' -55.5 NC_003278.1 + 6999 0.7 0.325948
Target:  5'- aCGGCGUCGAUGCcGUggugCAGcAGCGcgaUGGCg -3'
miRNA:   3'- gGCCGUAGCUACG-CG----GUC-UCGU---ACUG- -5'
11917 3' -55.5 NC_003278.1 + 12633 0.71 0.301975
Target:  5'- cCUGaGCAUCccccugcaGAUggGCGCCAGcGCAUGACa -3'
miRNA:   3'- -GGC-CGUAG--------CUA--CGCGGUCuCGUACUG- -5'
11917 3' -55.5 NC_003278.1 + 18878 0.71 0.301975
Target:  5'- -gGGCGUCGGUGuCGUC-GAGC-UGGCg -3'
miRNA:   3'- ggCCGUAGCUAC-GCGGuCUCGuACUG- -5'
11917 3' -55.5 NC_003278.1 + 4861 0.71 0.286762
Target:  5'- uCCGGCGUUGccGCGCCGGucaGGCuUGGa -3'
miRNA:   3'- -GGCCGUAGCuaCGCGGUC---UCGuACUg -5'
11917 3' -55.5 NC_003278.1 + 12345 0.71 0.286762
Target:  5'- cUCGGCG-CGGgcgGCGCgCAGGGCGcucUGGCg -3'
miRNA:   3'- -GGCCGUaGCUa--CGCG-GUCUCGU---ACUG- -5'
11917 3' -55.5 NC_003278.1 + 27186 0.72 0.265085
Target:  5'- gCGGCAgCGAUGUagGCCAGGGC--GGCg -3'
miRNA:   3'- gGCCGUaGCUACG--CGGUCUCGuaCUG- -5'
11917 3' -55.5 NC_003278.1 + 22064 0.72 0.265085
Target:  5'- cCCGGCGU-GcUGCuGCCGGAGC-UGGCc -3'
miRNA:   3'- -GGCCGUAgCuACG-CGGUCUCGuACUG- -5'
11917 3' -55.5 NC_003278.1 + 14274 0.72 0.25816
Target:  5'- gCCGGCAggUCGAUGC-CCAGguAGCccagGACg -3'
miRNA:   3'- -GGCCGU--AGCUACGcGGUC--UCGua--CUG- -5'
11917 3' -55.5 NC_003278.1 + 20213 0.72 0.250714
Target:  5'- gCCGGCGUCGGccGCgaguacgGCCAGAGCcUGGa -3'
miRNA:   3'- -GGCCGUAGCUa-CG-------CGGUCUCGuACUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.