miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11921 3' -58.3 NC_003278.1 + 21608 0.66 0.390857
Target:  5'- --cGUUCgACCAGCcgcugcuGGCCAuGCUGGGCGa -3'
miRNA:   3'- gacCAAG-UGGUCG-------UCGGU-CGGCUCGU- -5'
11921 3' -58.3 NC_003278.1 + 21894 0.71 0.183899
Target:  5'- uUGcGUUCGcgcucauCCAGCAGUUGGCUGAGCGu -3'
miRNA:   3'- gAC-CAAGU-------GGUCGUCGGUCGGCUCGU- -5'
11921 3' -58.3 NC_003278.1 + 21982 0.66 0.386233
Target:  5'- gUGGcgacaCGCCAGCAGCagccgcaucggugccCAGCCGGcGCGc -3'
miRNA:   3'- gACCaa---GUGGUCGUCG---------------GUCGGCU-CGU- -5'
11921 3' -58.3 NC_003278.1 + 22096 0.66 0.4078
Target:  5'- -gGGUgaucgcgucgUCGCCgcgaccgacgaacuGGCGcGCCGGCUGGGCAc -3'
miRNA:   3'- gaCCA----------AGUGG--------------UCGU-CGGUCGGCUCGU- -5'
11921 3' -58.3 NC_003278.1 + 22364 0.69 0.248649
Target:  5'- -aGGUU-GCCGGCGGuaccgaggaCCgAGCCGAGCAg -3'
miRNA:   3'- gaCCAAgUGGUCGUC---------GG-UCGGCUCGU- -5'
11921 3' -58.3 NC_003278.1 + 22814 0.66 0.400213
Target:  5'- -cGGUgcucgCGCCGGCgcuggcgGGCCuGCCGAuccuGCAg -3'
miRNA:   3'- gaCCAa----GUGGUCG-------UCGGuCGGCU----CGU- -5'
11921 3' -58.3 NC_003278.1 + 22875 0.73 0.120609
Target:  5'- -aGGccCGCCAGC-GCCGGCgCGAGCAc -3'
miRNA:   3'- gaCCaaGUGGUCGuCGGUCG-GCUCGU- -5'
11921 3' -58.3 NC_003278.1 + 23244 0.67 0.32213
Target:  5'- ----cUCGCCAGgGGCCGGCCGGa-- -3'
miRNA:   3'- gaccaAGUGGUCgUCGGUCGGCUcgu -5'
11921 3' -58.3 NC_003278.1 + 26148 0.66 0.373479
Target:  5'- uUGGUUCAgcCCAauacgcuugcGCucAGCCuguAGCCGAGCGc -3'
miRNA:   3'- gACCAAGU--GGU----------CG--UCGG---UCGGCUCGU- -5'
11921 3' -58.3 NC_003278.1 + 27243 0.68 0.309359
Target:  5'- aUGGggagCACCAGCauuGGCCgcucgaggcccgaggGGCUGAGCu -3'
miRNA:   3'- gACCaa--GUGGUCG---UCGG---------------UCGGCUCGu -5'
11921 3' -58.3 NC_003278.1 + 27785 0.69 0.235728
Target:  5'- gCUGGUcaGCCAGUacgaAGCCgccauGGCCGAGUg -3'
miRNA:   3'- -GACCAagUGGUCG----UCGG-----UCGGCUCGu -5'
11921 3' -58.3 NC_003278.1 + 28100 0.67 0.35576
Target:  5'- cCUGGUUCAUCcGCuGCgGGCgCG-GCAa -3'
miRNA:   3'- -GACCAAGUGGuCGuCGgUCG-GCuCGU- -5'
11921 3' -58.3 NC_003278.1 + 29309 0.84 0.017801
Target:  5'- -cGGUgaagaucgCACCGGCGGCCAcGCCGAGCAg -3'
miRNA:   3'- gaCCAa-------GUGGUCGUCGGU-CGGCUCGU- -5'
11921 3' -58.3 NC_003278.1 + 32130 0.75 0.098447
Target:  5'- uCUGGUcCAgCAGguGCCGGCCGcGGCu -3'
miRNA:   3'- -GACCAaGUgGUCguCGGUCGGC-UCGu -5'
11921 3' -58.3 NC_003278.1 + 32354 0.69 0.248649
Target:  5'- -gGGUUCGCCuggcacuGguGCgAGCCG-GCAg -3'
miRNA:   3'- gaCCAAGUGGu------CguCGgUCGGCuCGU- -5'
11921 3' -58.3 NC_003278.1 + 33205 0.67 0.314102
Target:  5'- -cGGUUcCGCCGGCuG-CGGCCGAGg- -3'
miRNA:   3'- gaCCAA-GUGGUCGuCgGUCGGCUCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.