Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11921 | 3' | -58.3 | NC_003278.1 | + | 8902 | 0.72 | 0.14485 |
Target: 5'- cCUGGUugacugcauagaucgUCGCCAGCGGCaGGUCGAGgCGa -3' miRNA: 3'- -GACCA---------------AGUGGUCGUCGgUCGGCUC-GU- -5' |
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11921 | 3' | -58.3 | NC_003278.1 | + | 22875 | 0.73 | 0.120609 |
Target: 5'- -aGGccCGCCAGC-GCCGGCgCGAGCAc -3' miRNA: 3'- gaCCaaGUGGUCGuCGGUCG-GCUCGU- -5' |
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11921 | 3' | -58.3 | NC_003278.1 | + | 32130 | 0.75 | 0.098447 |
Target: 5'- uCUGGUcCAgCAGguGCCGGCCGcGGCu -3' miRNA: 3'- -GACCAaGUgGUCguCGGUCGGC-UCGu -5' |
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11921 | 3' | -58.3 | NC_003278.1 | + | 29309 | 0.84 | 0.017801 |
Target: 5'- -cGGUgaagaucgCACCGGCGGCCAcGCCGAGCAg -3' miRNA: 3'- gaCCAa-------GUGGUCGUCGGU-CGGCUCGU- -5' |
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11921 | 3' | -58.3 | NC_003278.1 | + | 6500 | 0.69 | 0.24799 |
Target: 5'- gCUGGUagACCGGCAGC-AGCUcgaccuuGAGCGc -3' miRNA: 3'- -GACCAagUGGUCGUCGgUCGG-------CUCGU- -5' |
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11921 | 3' | -58.3 | NC_003278.1 | + | 22364 | 0.69 | 0.248649 |
Target: 5'- -aGGUU-GCCGGCGGuaccgaggaCCgAGCCGAGCAg -3' miRNA: 3'- gaCCAAgUGGUCGUC---------GG-UCGGCUCGU- -5' |
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11921 | 3' | -58.3 | NC_003278.1 | + | 16825 | 0.66 | 0.410669 |
Target: 5'- -cGGaaacUCACCGGacucCGGCCAGUCGcGCAg -3' miRNA: 3'- gaCCa---AGUGGUC----GUCGGUCGGCuCGU- -5' |
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11921 | 3' | -58.3 | NC_003278.1 | + | 20099 | 0.66 | 0.410669 |
Target: 5'- -aGGUccaugUCGCCcGCGGCUgccaGGuuGAGCAu -3' miRNA: 3'- gaCCA-----AGUGGuCGUCGG----UCggCUCGU- -5' |
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11921 | 3' | -58.3 | NC_003278.1 | + | 22096 | 0.66 | 0.4078 |
Target: 5'- -gGGUgaucgcgucgUCGCCgcgaccgacgaacuGGCGcGCCGGCUGGGCAc -3' miRNA: 3'- gaCCA----------AGUGG--------------UCGU-CGGUCGGCUCGU- -5' |
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11921 | 3' | -58.3 | NC_003278.1 | + | 7674 | 0.66 | 0.38256 |
Target: 5'- -cGGUUUcuACCucGCGGCacacggcaUAGCCGAGCGg -3' miRNA: 3'- gaCCAAG--UGGu-CGUCG--------GUCGGCUCGU- -5' |
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11921 | 3' | -58.3 | NC_003278.1 | + | 20329 | 0.67 | 0.347126 |
Target: 5'- cCUGGa-CGCCAGC-GUU-GCCGAGCAg -3' miRNA: 3'- -GACCaaGUGGUCGuCGGuCGGCUCGU- -5' |
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11921 | 3' | -58.3 | NC_003278.1 | + | 19491 | 0.67 | 0.338642 |
Target: 5'- -gGGUUgcCGgCGGCGGCCAucuGCUGAGCc -3' miRNA: 3'- gaCCAA--GUgGUCGUCGGU---CGGCUCGu -5' |
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11921 | 3' | -58.3 | NC_003278.1 | + | 27243 | 0.68 | 0.309359 |
Target: 5'- aUGGggagCACCAGCauuGGCCgcucgaggcccgaggGGCUGAGCu -3' miRNA: 3'- gACCaa--GUGGUCG---UCGG---------------UCGGCUCGu -5' |
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11921 | 3' | -58.3 | NC_003278.1 | + | 11931 | 0.68 | 0.306227 |
Target: 5'- -cGGcgaUGCCcaaGGCAGCCAGCCGgucAGCAg -3' miRNA: 3'- gaCCaa-GUGG---UCGUCGGUCGGC---UCGU- -5' |
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11921 | 3' | -58.3 | NC_003278.1 | + | 9073 | 0.69 | 0.255327 |
Target: 5'- -cGGUgcCGCCGGCauAGCCGcCCGGGCGa -3' miRNA: 3'- gaCCAa-GUGGUCG--UCGGUcGGCUCGU- -5' |
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11921 | 3' | -58.3 | NC_003278.1 | + | 10180 | 1.09 | 0.000228 |
Target: 5'- aCUGGUUCACCAGCAGCCAGCCGAGCAg -3' miRNA: 3'- -GACCAAGUGGUCGUCGGUCGGCUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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