Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11924 | 3' | -55.2 | NC_003278.1 | + | 13225 | 1.09 | 0.000574 |
Target: 5'- cCGUCACCACGACAACGGCAGGCGAUGg -3' miRNA: 3'- -GCAGUGGUGCUGUUGCCGUCCGCUAC- -5' |
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11924 | 3' | -55.2 | NC_003278.1 | + | 17521 | 0.77 | 0.135277 |
Target: 5'- -uUCGCgCGCGGCGaaguucucGCGGUAGGCGGUGg -3' miRNA: 3'- gcAGUG-GUGCUGU--------UGCCGUCCGCUAC- -5' |
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11924 | 3' | -55.2 | NC_003278.1 | + | 12110 | 0.76 | 0.16037 |
Target: 5'- -aUCACCGCGcCGucGCGGUAGGUGGUGc -3' miRNA: 3'- gcAGUGGUGCuGU--UGCCGUCCGCUAC- -5' |
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11924 | 3' | -55.2 | NC_003278.1 | + | 11863 | 0.75 | 0.169627 |
Target: 5'- gGUcCACCGCGGCGAUGGUgccgAGGCGGa- -3' miRNA: 3'- gCA-GUGGUGCUGUUGCCG----UCCGCUac -5' |
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11924 | 3' | -55.2 | NC_003278.1 | + | 2152 | 0.74 | 0.223375 |
Target: 5'- aCGUCGCC-CGGCuga-GCAGGCGGUGc -3' miRNA: 3'- -GCAGUGGuGCUGuugcCGUCCGCUAC- -5' |
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11924 | 3' | -55.2 | NC_003278.1 | + | 5522 | 0.74 | 0.194351 |
Target: 5'- cCGUCGCCA-GugGuaucgguACGGCuGGCGAUGg -3' miRNA: 3'- -GCAGUGGUgCugU-------UGCCGuCCGCUAC- -5' |
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11924 | 3' | -55.2 | NC_003278.1 | + | 30866 | 0.71 | 0.34627 |
Target: 5'- uGUCGCgCugGGCGAuCGGCAGcaggcguuucagcGCGGUGa -3' miRNA: 3'- gCAGUG-GugCUGUU-GCCGUC-------------CGCUAC- -5' |
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11924 | 3' | -55.2 | NC_003278.1 | + | 14108 | 0.71 | 0.306227 |
Target: 5'- uCGUCGCCA-GGCcgUGGCGGGCcagGAUGu -3' miRNA: 3'- -GCAGUGGUgCUGuuGCCGUCCG---CUAC- -5' |
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11924 | 3' | -55.2 | NC_003278.1 | + | 21321 | 0.7 | 0.391786 |
Target: 5'- aGUCGCUgaaGCG-CGcCGGCAGGuCGAUGc -3' miRNA: 3'- gCAGUGG---UGCuGUuGCCGUCC-GCUAC- -5' |
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11924 | 3' | -55.2 | NC_003278.1 | + | 30814 | 0.7 | 0.373478 |
Target: 5'- cCGaUCGCCcagcGCGACAGCGGcCAGaGCGGc- -3' miRNA: 3'- -GC-AGUGG----UGCUGUUGCC-GUC-CGCUac -5' |
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11924 | 3' | -55.2 | NC_003278.1 | + | 8884 | 0.69 | 0.398331 |
Target: 5'- uCGUCGCCAgCGGCAGgucgaggcgagcucCGGC-GGCGAc- -3' miRNA: 3'- -GCAGUGGU-GCUGUU--------------GCCGuCCGCUac -5' |
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11924 | 3' | -55.2 | NC_003278.1 | + | 19977 | 0.69 | 0.410668 |
Target: 5'- --cUugCugGACAGCGGCAgGGUGcgGg -3' miRNA: 3'- gcaGugGugCUGUUGCCGU-CCGCuaC- -5' |
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11924 | 3' | -55.2 | NC_003278.1 | + | 12137 | 0.69 | 0.420319 |
Target: 5'- -cUCAUCAgCGACGGCGGCAuccgcaucgucGGCGAc- -3' miRNA: 3'- gcAGUGGU-GCUGUUGCCGU-----------CCGCUac -5' |
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11924 | 3' | -55.2 | NC_003278.1 | + | 2850 | 0.68 | 0.480949 |
Target: 5'- uCGaCACCAcCGGCAugGGCucuGGCGu-- -3' miRNA: 3'- -GCaGUGGU-GCUGUugCCGu--CCGCuac -5' |
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11924 | 3' | -55.2 | NC_003278.1 | + | 31858 | 0.68 | 0.460246 |
Target: 5'- --cCGCCGCGcCGcCGGCGGGCGccGa -3' miRNA: 3'- gcaGUGGUGCuGUuGCCGUCCGCuaC- -5' |
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11924 | 3' | -55.2 | NC_003278.1 | + | 22085 | 0.67 | 0.544423 |
Target: 5'- uCGUCGCCGCGAcCGAcgaacuggcgcgcCGGCuGGGCaccGAUGc -3' miRNA: 3'- -GCAGUGGUGCU-GUU-------------GCCG-UCCG---CUAC- -5' |
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11924 | 3' | -55.2 | NC_003278.1 | + | 12046 | 0.67 | 0.523637 |
Target: 5'- uCG-CACCACcuaccGCGACGGCGcGGUGAUu -3' miRNA: 3'- -GCaGUGGUGc----UGUUGCCGU-CCGCUAc -5' |
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11924 | 3' | -55.2 | NC_003278.1 | + | 17185 | 0.67 | 0.512819 |
Target: 5'- aCGcCGCCACuGugGugGuGCGGGUGAa- -3' miRNA: 3'- -GCaGUGGUG-CugUugC-CGUCCGCUac -5' |
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11924 | 3' | -55.2 | NC_003278.1 | + | 32138 | 0.67 | 0.512819 |
Target: 5'- --cCACuCACGACuGCGGCgagcuGGGCGGUc -3' miRNA: 3'- gcaGUG-GUGCUGuUGCCG-----UCCGCUAc -5' |
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11924 | 3' | -55.2 | NC_003278.1 | + | 12272 | 0.67 | 0.545525 |
Target: 5'- gGUCAuacCCACGGCGGCGucauacCGGGCGGc- -3' miRNA: 3'- gCAGU---GGUGCUGUUGCc-----GUCCGCUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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