miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11924 3' -55.2 NC_003278.1 + 20541 0.67 0.534541
Target:  5'- gGUCACCGCGu--ACuGCccGGCGAUGu -3'
miRNA:   3'- gCAGUGGUGCuguUGcCGu-CCGCUAC- -5'
11924 3' -55.2 NC_003278.1 + 13372 0.66 0.612635
Target:  5'- gCGUCGCguCGAC-ACGGUacucgagcacuuGGGCGGa- -3'
miRNA:   3'- -GCAGUGguGCUGuUGCCG------------UCCGCUac -5'
11924 3' -55.2 NC_003278.1 + 35076 0.66 0.60135
Target:  5'- uGUUGCCcugggACGGCAgguuugACGGCAGGCu--- -3'
miRNA:   3'- gCAGUGG-----UGCUGU------UGCCGUCCGcuac -5'
11924 3' -55.2 NC_003278.1 + 3470 0.66 0.60135
Target:  5'- gGUCGCCA-----GCGGUAuGGCGAUGc -3'
miRNA:   3'- gCAGUGGUgcuguUGCCGU-CCGCUAC- -5'
11924 3' -55.2 NC_003278.1 + 12596 0.66 0.590092
Target:  5'- gGUgAUCugGAC-ACGGCucAGGCGGa- -3'
miRNA:   3'- gCAgUGGugCUGuUGCCG--UCCGCUac -5'
11924 3' -55.2 NC_003278.1 + 10021 0.66 0.586722
Target:  5'- gGUCGCCGuuguuccugaguucCGGC-ACGGC-GGCGAg- -3'
miRNA:   3'- gCAGUGGU--------------GCUGuUGCCGuCCGCUac -5'
11924 3' -55.2 NC_003278.1 + 21105 0.67 0.567698
Target:  5'- --cCGCCACGACGGCGGCAauuGCc--- -3'
miRNA:   3'- gcaGUGGUGCUGUUGCCGUc--CGcuac -5'
11924 3' -55.2 NC_003278.1 + 8587 0.67 0.545525
Target:  5'- aCGUUGCCGCGGgAACGgaagaucaGCAGGCa--- -3'
miRNA:   3'- -GCAGUGGUGCUgUUGC--------CGUCCGcuac -5'
11924 3' -55.2 NC_003278.1 + 22085 0.67 0.544423
Target:  5'- uCGUCGCCGCGAcCGAcgaacuggcgcgcCGGCuGGGCaccGAUGc -3'
miRNA:   3'- -GCAGUGGUGCU-GUU-------------GCCG-UCCG---CUAC- -5'
11924 3' -55.2 NC_003278.1 + 11863 0.75 0.169627
Target:  5'- gGUcCACCGCGGCGAUGGUgccgAGGCGGa- -3'
miRNA:   3'- gCA-GUGGUGCUGUUGCCG----UCCGCUac -5'
11924 3' -55.2 NC_003278.1 + 30866 0.71 0.34627
Target:  5'- uGUCGCgCugGGCGAuCGGCAGcaggcguuucagcGCGGUGa -3'
miRNA:   3'- gCAGUG-GugCUGUU-GCCGUC-------------CGCUAC- -5'
11924 3' -55.2 NC_003278.1 + 21321 0.7 0.391786
Target:  5'- aGUCGCUgaaGCG-CGcCGGCAGGuCGAUGc -3'
miRNA:   3'- gCAGUGG---UGCuGUuGCCGUCC-GCUAC- -5'
11924 3' -55.2 NC_003278.1 + 32307 0.67 0.523637
Target:  5'- uGUCGCC--GACGGCGcGCAGGCu--- -3'
miRNA:   3'- gCAGUGGugCUGUUGC-CGUCCGcuac -5'
11924 3' -55.2 NC_003278.1 + 14108 0.71 0.306227
Target:  5'- uCGUCGCCA-GGCcgUGGCGGGCcagGAUGu -3'
miRNA:   3'- -GCAGUGGUgCUGuuGCCGUCCG---CUAC- -5'
11924 3' -55.2 NC_003278.1 + 32336 0.67 0.512819
Target:  5'- -aUCGCCG-GGCAGCGGCAuGCGGc- -3'
miRNA:   3'- gcAGUGGUgCUGUUGCCGUcCGCUac -5'
11924 3' -55.2 NC_003278.1 + 8884 0.69 0.398331
Target:  5'- uCGUCGCCAgCGGCAGgucgaggcgagcucCGGC-GGCGAc- -3'
miRNA:   3'- -GCAGUGGU-GCUGUU--------------GCCGuCCGCUac -5'
11924 3' -55.2 NC_003278.1 + 5522 0.74 0.194351
Target:  5'- cCGUCGCCA-GugGuaucgguACGGCuGGCGAUGg -3'
miRNA:   3'- -GCAGUGGUgCugU-------UGCCGuCCGCUAC- -5'
11924 3' -55.2 NC_003278.1 + 13225 1.09 0.000574
Target:  5'- cCGUCACCACGACAACGGCAGGCGAUGg -3'
miRNA:   3'- -GCAGUGGUGCUGUUGCCGUCCGCUAC- -5'
11924 3' -55.2 NC_003278.1 + 2850 0.68 0.480949
Target:  5'- uCGaCACCAcCGGCAugGGCucuGGCGu-- -3'
miRNA:   3'- -GCaGUGGU-GCUGUugCCGu--CCGCuac -5'
11924 3' -55.2 NC_003278.1 + 19977 0.69 0.410668
Target:  5'- --cUugCugGACAGCGGCAgGGUGcgGg -3'
miRNA:   3'- gcaGugGugCUGUUGCCGU-CCGCuaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.