miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11924 5' -60 NC_003278.1 + 8735 0.75 0.099657
Target:  5'- uGGCAUCGCUGGCcCGaagacccugGCCGcccUCGGCGGc -3'
miRNA:   3'- -CCGUAGCGGCUGcGC---------UGGC---AGCCGCC- -5'
11924 5' -60 NC_003278.1 + 33226 0.72 0.165808
Target:  5'- aGGcCAUCGCCGGCGUGAUgggcaccacccuguUGUUGGCu- -3'
miRNA:   3'- -CC-GUAGCGGCUGCGCUG--------------GCAGCCGcc -5'
11924 5' -60 NC_003278.1 + 21402 0.71 0.185809
Target:  5'- cGGCAuccauUCGCCGuCGCGGgUGUUcgccgaccugGGCGGg -3'
miRNA:   3'- -CCGU-----AGCGGCuGCGCUgGCAG----------CCGCC- -5'
11924 5' -60 NC_003278.1 + 13121 0.7 0.217252
Target:  5'- cGCGcCGCCGACG-GuCgCGUCGGCGa -3'
miRNA:   3'- cCGUaGCGGCUGCgCuG-GCAGCCGCc -5'
11924 5' -60 NC_003278.1 + 2556 0.7 0.228704
Target:  5'- cGGCGUgGCCGGuguugucguUGCGGCCGgCGGUa- -3'
miRNA:   3'- -CCGUAgCGGCU---------GCGCUGGCaGCCGcc -5'
11924 5' -60 NC_003278.1 + 20512 0.7 0.240663
Target:  5'- cGGCAcC-CUGAUGCGcGCCGUCgagGGCGGc -3'
miRNA:   3'- -CCGUaGcGGCUGCGC-UGGCAG---CCGCC- -5'
11924 5' -60 NC_003278.1 + 14624 0.7 0.246836
Target:  5'- aGGUGcUgGCCGGCaaCGGCCugGUCGGCGGu -3'
miRNA:   3'- -CCGU-AgCGGCUGc-GCUGG--CAGCCGCC- -5'
11924 5' -60 NC_003278.1 + 21645 0.69 0.279679
Target:  5'- gGGCAagagCGCCGGCGCcAUCGgugcccuggugcUCGGCGc -3'
miRNA:   3'- -CCGUa---GCGGCUGCGcUGGC------------AGCCGCc -5'
11924 5' -60 NC_003278.1 + 30346 0.68 0.315905
Target:  5'- cGuCAaCGCCGACGCGcCCGa-GGUGGc -3'
miRNA:   3'- cC-GUaGCGGCUGCGCuGGCagCCGCC- -5'
11924 5' -60 NC_003278.1 + 32251 0.68 0.315905
Target:  5'- -----aGCCuGCGCG-CCGUCGGCGa -3'
miRNA:   3'- ccguagCGGcUGCGCuGGCAGCCGCc -5'
11924 5' -60 NC_003278.1 + 11887 0.68 0.307641
Target:  5'- gGGCAUCGCCGcgggccgGCGcCGACCG-CGaaUGGa -3'
miRNA:   3'- -CCGUAGCGGC-------UGC-GCUGGCaGCc-GCC- -5'
11924 5' -60 NC_003278.1 + 4408 0.68 0.301004
Target:  5'- cGCAUCGCCGucgaagGgGCGACCa-CGGaCGGc -3'
miRNA:   3'- cCGUAGCGGC------UgCGCUGGcaGCC-GCC- -5'
11924 5' -60 NC_003278.1 + 30 0.69 0.286651
Target:  5'- cGGCGaaugaGCCGAUGCGGCCaggaaacgccauGUCcuccuGGCGGc -3'
miRNA:   3'- -CCGUag---CGGCUGCGCUGG------------CAG-----CCGCC- -5'
11924 5' -60 NC_003278.1 + 21318 0.69 0.284545
Target:  5'- cGGCcugcUCGCCGGCuuagggcagaucaaGCGcgccguccaGCgCGUCGGCGGc -3'
miRNA:   3'- -CCGu---AGCGGCUG--------------CGC---------UG-GCAGCCGCC- -5'
11924 5' -60 NC_003278.1 + 32652 0.69 0.279679
Target:  5'- aGGCAcguacuccgUCGCCGAucccCGCGGCCagaguuUCGGCa- -3'
miRNA:   3'- -CCGU---------AGCGGCU----GCGCUGGc-----AGCCGcc -5'
11924 5' -60 NC_003278.1 + 13186 1.11 0.000196
Target:  5'- aGGCAUCGCCGACGCGACCGUCGGCGGc -3'
miRNA:   3'- -CCGUAGCGGCUGCGCUGGCAGCCGCC- -5'
11924 5' -60 NC_003278.1 + 7941 0.66 0.425963
Target:  5'- uGCcgUuCCGGgGCGGCCGUCGGaaugucCGGc -3'
miRNA:   3'- cCGuaGcGGCUgCGCUGGCAGCC------GCC- -5'
11924 5' -60 NC_003278.1 + 28284 0.66 0.416715
Target:  5'- gGGCAUgGgCCagguACGCccgGGCCGaggCGGCGGg -3'
miRNA:   3'- -CCGUAgC-GGc---UGCG---CUGGCa--GCCGCC- -5'
11924 5' -60 NC_003278.1 + 22281 0.66 0.407591
Target:  5'- ----cCGCCG-CGgGguGCCGUCGGCGa -3'
miRNA:   3'- ccguaGCGGCuGCgC--UGGCAGCCGCc -5'
11924 5' -60 NC_003278.1 + 12187 0.66 0.406685
Target:  5'- cGcCGUCGCUGAUgaguucgGUGguACCGcCGGCGGg -3'
miRNA:   3'- cC-GUAGCGGCUG-------CGC--UGGCaGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.