miRNA display CGI


Results 1 - 20 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11924 5' -60 NC_003278.1 + 33015 0.67 0.35556
Target:  5'- aGCGUgGCCGAucCGCGcauGCCGaaGGCGa -3'
miRNA:   3'- cCGUAgCGGCU--GCGC---UGGCagCCGCc -5'
11924 5' -60 NC_003278.1 + 4408 0.68 0.301004
Target:  5'- cGCAUCGCCGucgaagGgGCGACCa-CGGaCGGc -3'
miRNA:   3'- cCGUAGCGGC------UgCGCUGGcaGCC-GCC- -5'
11924 5' -60 NC_003278.1 + 11887 0.68 0.307641
Target:  5'- gGGCAUCGCCGcgggccgGCGcCGACCG-CGaaUGGa -3'
miRNA:   3'- -CCGUAGCGGC-------UGC-GCUGGCaGCc-GCC- -5'
11924 5' -60 NC_003278.1 + 32251 0.68 0.315905
Target:  5'- -----aGCCuGCGCG-CCGUCGGCGa -3'
miRNA:   3'- ccguagCGGcUGCGCuGGCAGCCGCc -5'
11924 5' -60 NC_003278.1 + 30346 0.68 0.315905
Target:  5'- cGuCAaCGCCGACGCGcCCGa-GGUGGc -3'
miRNA:   3'- cC-GUaGCGGCUGCGCuGGCagCCGCC- -5'
11924 5' -60 NC_003278.1 + 17824 0.68 0.32279
Target:  5'- uGGCcgacacuAUCGCCGAaGCGcACaUGUgGGCGGu -3'
miRNA:   3'- -CCG-------UAGCGGCUgCGC-UG-GCAgCCGCC- -5'
11924 5' -60 NC_003278.1 + 29246 0.68 0.323562
Target:  5'- cGGCGUggcCGCCGGUGCGAucuucaCCGgcagCGGCGc -3'
miRNA:   3'- -CCGUA---GCGGCUGCGCU------GGCa---GCCGCc -5'
11924 5' -60 NC_003278.1 + 22004 0.67 0.339288
Target:  5'- cGCAUCggugcccaGCCGGCGCGccaguUCGUCGgucGCGGc -3'
miRNA:   3'- cCGUAG--------CGGCUGCGCu----GGCAGC---CGCC- -5'
11924 5' -60 NC_003278.1 + 5000 0.67 0.346543
Target:  5'- aGCgAUCGCCGAgcacagcCGCGACCuGggugagcaacUCGGCGa -3'
miRNA:   3'- cCG-UAGCGGCU-------GCGCUGG-C----------AGCCGCc -5'
11924 5' -60 NC_003278.1 + 30 0.69 0.286651
Target:  5'- cGGCGaaugaGCCGAUGCGGCCaggaaacgccauGUCcuccuGGCGGc -3'
miRNA:   3'- -CCGUag---CGGCUGCGCUGG------------CAG-----CCGCC- -5'
11924 5' -60 NC_003278.1 + 21318 0.69 0.284545
Target:  5'- cGGCcugcUCGCCGGCuuagggcagaucaaGCGcgccguccaGCgCGUCGGCGGc -3'
miRNA:   3'- -CCGu---AGCGGCUG--------------CGC---------UG-GCAGCCGCC- -5'
11924 5' -60 NC_003278.1 + 32652 0.69 0.279679
Target:  5'- aGGCAcguacuccgUCGCCGAucccCGCGGCCagaguuUCGGCa- -3'
miRNA:   3'- -CCGU---------AGCGGCU----GCGCUGGc-----AGCCGcc -5'
11924 5' -60 NC_003278.1 + 8735 0.75 0.099657
Target:  5'- uGGCAUCGCUGGCcCGaagacccugGCCGcccUCGGCGGc -3'
miRNA:   3'- -CCGUAGCGGCUGcGC---------UGGC---AGCCGCC- -5'
11924 5' -60 NC_003278.1 + 33226 0.72 0.165808
Target:  5'- aGGcCAUCGCCGGCGUGAUgggcaccacccuguUGUUGGCu- -3'
miRNA:   3'- -CC-GUAGCGGCUGCGCUG--------------GCAGCCGcc -5'
11924 5' -60 NC_003278.1 + 21402 0.71 0.185809
Target:  5'- cGGCAuccauUCGCCGuCGCGGgUGUUcgccgaccugGGCGGg -3'
miRNA:   3'- -CCGU-----AGCGGCuGCGCUgGCAG----------CCGCC- -5'
11924 5' -60 NC_003278.1 + 13121 0.7 0.217252
Target:  5'- cGCGcCGCCGACG-GuCgCGUCGGCGa -3'
miRNA:   3'- cCGUaGCGGCUGCgCuG-GCAGCCGCc -5'
11924 5' -60 NC_003278.1 + 2556 0.7 0.228704
Target:  5'- cGGCGUgGCCGGuguugucguUGCGGCCGgCGGUa- -3'
miRNA:   3'- -CCGUAgCGGCU---------GCGCUGGCaGCCGcc -5'
11924 5' -60 NC_003278.1 + 20512 0.7 0.240663
Target:  5'- cGGCAcC-CUGAUGCGcGCCGUCgagGGCGGc -3'
miRNA:   3'- -CCGUaGcGGCUGCGC-UGGCAG---CCGCC- -5'
11924 5' -60 NC_003278.1 + 14624 0.7 0.246836
Target:  5'- aGGUGcUgGCCGGCaaCGGCCugGUCGGCGGu -3'
miRNA:   3'- -CCGU-AgCGGCUGc-GCUGG--CAGCCGCC- -5'
11924 5' -60 NC_003278.1 + 21645 0.69 0.279679
Target:  5'- gGGCAagagCGCCGGCGCcAUCGgugcccuggugcUCGGCGc -3'
miRNA:   3'- -CCGUa---GCGGCUGCGcUGGC------------AGCCGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.