miRNA display CGI


Results 1 - 20 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11924 5' -60 NC_003278.1 + 13186 1.11 0.000196
Target:  5'- aGGCAUCGCCGACGCGACCGUCGGCGGc -3'
miRNA:   3'- -CCGUAGCGGCUGCGCUGGCAGCCGCC- -5'
11924 5' -60 NC_003278.1 + 29878 0.81 0.034989
Target:  5'- cGGCGcCGCCGGCGCGGCUGUUGucgcuGCGGu -3'
miRNA:   3'- -CCGUaGCGGCUGCGCUGGCAGC-----CGCC- -5'
11924 5' -60 NC_003278.1 + 7783 0.81 0.036007
Target:  5'- cGCAcCGCCGGCGUGACCGa-GGCGGu -3'
miRNA:   3'- cCGUaGCGGCUGCGCUGGCagCCGCC- -5'
11924 5' -60 NC_003278.1 + 8735 0.75 0.099657
Target:  5'- uGGCAUCGCUGGCcCGaagacccugGCCGcccUCGGCGGc -3'
miRNA:   3'- -CCGUAGCGGCUGcGC---------UGGC---AGCCGCC- -5'
11924 5' -60 NC_003278.1 + 31926 0.75 0.102455
Target:  5'- cGGCAUCcgGUCGGCGCccGCCGgcggcgCGGCGGa -3'
miRNA:   3'- -CCGUAG--CGGCUGCGc-UGGCa-----GCCGCC- -5'
11924 5' -60 NC_003278.1 + 21411 0.74 0.117586
Target:  5'- cGGCGcCGCCGACGCG-CUGgaCGGCGc -3'
miRNA:   3'- -CCGUaGCGGCUGCGCuGGCa-GCCGCc -5'
11924 5' -60 NC_003278.1 + 20279 0.74 0.120853
Target:  5'- aGGCucUgGCCGuacuCGCGGCCGacgcCGGCGGa -3'
miRNA:   3'- -CCGu-AgCGGCu---GCGCUGGCa---GCCGCC- -5'
11924 5' -60 NC_003278.1 + 14123 0.74 0.124203
Target:  5'- gGGUGUCGCCGucgaucguCGCcaGGCCGU-GGCGGg -3'
miRNA:   3'- -CCGUAGCGGCu-------GCG--CUGGCAgCCGCC- -5'
11924 5' -60 NC_003278.1 + 5030 0.74 0.12764
Target:  5'- cGGCcUCGCCGACcUGGCCGaacUCGGCuuGGg -3'
miRNA:   3'- -CCGuAGCGGCUGcGCUGGC---AGCCG--CC- -5'
11924 5' -60 NC_003278.1 + 22089 0.73 0.154258
Target:  5'- cGCGUCGUCGcCGCGACCGacgaacUGGCGc -3'
miRNA:   3'- cCGUAGCGGCuGCGCUGGCa-----GCCGCc -5'
11924 5' -60 NC_003278.1 + 33226 0.72 0.165808
Target:  5'- aGGcCAUCGCCGGCGUGAUgggcaccacccuguUGUUGGCu- -3'
miRNA:   3'- -CC-GUAGCGGCUGCGCUG--------------GCAGCCGcc -5'
11924 5' -60 NC_003278.1 + 20319 0.72 0.167138
Target:  5'- aGCGUUGCCGA-GCagGGCCGU-GGCGGu -3'
miRNA:   3'- cCGUAGCGGCUgCG--CUGGCAgCCGCC- -5'
11924 5' -60 NC_003278.1 + 21402 0.71 0.185809
Target:  5'- cGGCAuccauUCGCCGuCGCGGgUGUUcgccgaccugGGCGGg -3'
miRNA:   3'- -CCGU-----AGCGGCuGCGCUgGCAG----------CCGCC- -5'
11924 5' -60 NC_003278.1 + 8719 0.71 0.190755
Target:  5'- uGGCggCGCCGAaGUGGCCGUCcucguagagguuGGCGc -3'
miRNA:   3'- -CCGuaGCGGCUgCGCUGGCAG------------CCGCc -5'
11924 5' -60 NC_003278.1 + 8538 0.71 0.190755
Target:  5'- uGGCGU-GCCaGAUGCuGACCGgUgGGCGGu -3'
miRNA:   3'- -CCGUAgCGG-CUGCG-CUGGC-AgCCGCC- -5'
11924 5' -60 NC_003278.1 + 13121 0.7 0.217252
Target:  5'- cGCGcCGCCGACG-GuCgCGUCGGCGa -3'
miRNA:   3'- cCGUaGCGGCUGCgCuG-GCAGCCGCc -5'
11924 5' -60 NC_003278.1 + 27003 0.7 0.222916
Target:  5'- cGGCAU-GUCG-UGCGGCCagguGUUGGCGGu -3'
miRNA:   3'- -CCGUAgCGGCuGCGCUGG----CAGCCGCC- -5'
11924 5' -60 NC_003278.1 + 14285 0.7 0.228704
Target:  5'- cGUcUCGCCgGGCGCG-CCGcCGGCGu -3'
miRNA:   3'- cCGuAGCGG-CUGCGCuGGCaGCCGCc -5'
11924 5' -60 NC_003278.1 + 2556 0.7 0.228704
Target:  5'- cGGCGUgGCCGGuguugucguUGCGGCCGgCGGUa- -3'
miRNA:   3'- -CCGUAgCGGCU---------GCGCUGGCaGCCGcc -5'
11924 5' -60 NC_003278.1 + 20512 0.7 0.240663
Target:  5'- cGGCAcC-CUGAUGCGcGCCGUCgagGGCGGc -3'
miRNA:   3'- -CCGUaGcGGCUGCGC-UGGCAG---CCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.