miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11924 5' -60 NC_003278.1 + 30 0.69 0.286651
Target:  5'- cGGCGaaugaGCCGAUGCGGCCaggaaacgccauGUCcuccuGGCGGc -3'
miRNA:   3'- -CCGUag---CGGCUGCGCUGG------------CAG-----CCGCC- -5'
11924 5' -60 NC_003278.1 + 2556 0.7 0.228704
Target:  5'- cGGCGUgGCCGGuguugucguUGCGGCCGgCGGUa- -3'
miRNA:   3'- -CCGUAgCGGCU---------GCGCUGGCaGCCGcc -5'
11924 5' -60 NC_003278.1 + 2664 0.67 0.375802
Target:  5'- cGGCGUCGaauuCGAgGCGGCCGUUcuugaucacugaccaGGCc- -3'
miRNA:   3'- -CCGUAGCg---GCUgCGCUGGCAG---------------CCGcc -5'
11924 5' -60 NC_003278.1 + 4408 0.68 0.301004
Target:  5'- cGCAUCGCCGucgaagGgGCGACCa-CGGaCGGc -3'
miRNA:   3'- cCGUAGCGGC------UgCGCUGGcaGCC-GCC- -5'
11924 5' -60 NC_003278.1 + 4494 0.67 0.372375
Target:  5'- aGUcgCGCuCGAuguUGCGGCCGUCcGUGGu -3'
miRNA:   3'- cCGuaGCG-GCU---GCGCUGGCAGcCGCC- -5'
11924 5' -60 NC_003278.1 + 4960 0.67 0.380983
Target:  5'- cGCAcccaaGCCGAguuCGGCCagGUCGGCGGg -3'
miRNA:   3'- cCGUag---CGGCUgc-GCUGG--CAGCCGCC- -5'
11924 5' -60 NC_003278.1 + 5000 0.67 0.346543
Target:  5'- aGCgAUCGCCGAgcacagcCGCGACCuGggugagcaacUCGGCGa -3'
miRNA:   3'- cCG-UAGCGGCU-------GCGCUGG-C----------AGCCGCc -5'
11924 5' -60 NC_003278.1 + 5030 0.74 0.12764
Target:  5'- cGGCcUCGCCGACcUGGCCGaacUCGGCuuGGg -3'
miRNA:   3'- -CCGuAGCGGCUGcGCUGGC---AGCCG--CC- -5'
11924 5' -60 NC_003278.1 + 5082 0.68 0.29664
Target:  5'- uGC-UCGCCGAguugcucacccagguCGCGGCUGugcUCGGCGa -3'
miRNA:   3'- cCGuAGCGGCU---------------GCGCUGGC---AGCCGCc -5'
11924 5' -60 NC_003278.1 + 5564 0.67 0.372375
Target:  5'- cGCugGUUGUCGAgCGCGGacaCGUCGcGCGGc -3'
miRNA:   3'- cCG--UAGCGGCU-GCGCUg--GCAGC-CGCC- -5'
11924 5' -60 NC_003278.1 + 6829 0.66 0.398593
Target:  5'- uGGCAUgGCCGGCGgcgagguaGAgCuUCGcGCGGg -3'
miRNA:   3'- -CCGUAgCGGCUGCg-------CUgGcAGC-CGCC- -5'
11924 5' -60 NC_003278.1 + 7154 0.67 0.384463
Target:  5'- aGGgAUCGCUguuGAUGUgcccggcugggaccgGGCCGUUGGCGa -3'
miRNA:   3'- -CCgUAGCGG---CUGCG---------------CUGGCAGCCGCc -5'
11924 5' -60 NC_003278.1 + 7783 0.81 0.036007
Target:  5'- cGCAcCGCCGGCGUGACCGa-GGCGGu -3'
miRNA:   3'- cCGUaGCGGCUGCGCUGGCagCCGCC- -5'
11924 5' -60 NC_003278.1 + 7941 0.66 0.425963
Target:  5'- uGCcgUuCCGGgGCGGCCGUCGGaaugucCGGc -3'
miRNA:   3'- cCGuaGcGGCUgCGCUGGCAGCC------GCC- -5'
11924 5' -60 NC_003278.1 + 8538 0.71 0.190755
Target:  5'- uGGCGU-GCCaGAUGCuGACCGgUgGGCGGu -3'
miRNA:   3'- -CCGUAgCGG-CUGCG-CUGGC-AgCCGCC- -5'
11924 5' -60 NC_003278.1 + 8719 0.71 0.190755
Target:  5'- uGGCggCGCCGAaGUGGCCGUCcucguagagguuGGCGc -3'
miRNA:   3'- -CCGuaGCGGCUgCGCUGGCAG------------CCGCc -5'
11924 5' -60 NC_003278.1 + 8735 0.75 0.099657
Target:  5'- uGGCAUCGCUGGCcCGaagacccugGCCGcccUCGGCGGc -3'
miRNA:   3'- -CCGUAGCGGCUGcGC---------UGGC---AGCCGCC- -5'
11924 5' -60 NC_003278.1 + 8874 0.67 0.35556
Target:  5'- cGGCAg-GUCGAgGCGAgcuCCGgCGGCGa -3'
miRNA:   3'- -CCGUagCGGCUgCGCU---GGCaGCCGCc -5'
11924 5' -60 NC_003278.1 + 9104 0.69 0.266141
Target:  5'- uGGCGagcguUCGCCaGGCGCugGugC-UCGGCGGu -3'
miRNA:   3'- -CCGU-----AGCGG-CUGCG--CugGcAGCCGCC- -5'
11924 5' -60 NC_003278.1 + 9555 0.67 0.367274
Target:  5'- gGGCGUCGCUGGCuuuccucgccaacuCGGCCuGggccaGGCGGg -3'
miRNA:   3'- -CCGUAGCGGCUGc-------------GCUGG-Cag---CCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.