miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11926 5' -55.3 NC_003278.1 + 8784 0.66 0.592811
Target:  5'- cGGG-CCAgCGAU-GCCAUCGGCGa- -3'
miRNA:   3'- uCUUaGGUgGCUAcCGGUAGCCGUca -5'
11926 5' -55.3 NC_003278.1 + 30477 0.66 0.589399
Target:  5'- uGAAgcuggCCGCCGAccaccgccagaaggUGGCCGacgCGGCAa- -3'
miRNA:   3'- uCUUa----GGUGGCU--------------ACCGGUa--GCCGUca -5'
11926 5' -55.3 NC_003278.1 + 8620 0.66 0.581452
Target:  5'- aAGggUCaUGCgGAUGGCC-UCaGCAGg -3'
miRNA:   3'- -UCuuAG-GUGgCUACCGGuAGcCGUCa -5'
11926 5' -55.3 NC_003278.1 + 23484 0.66 0.570139
Target:  5'- uAGucgCCGCCGGU-GUCGUCGGcCAGg -3'
miRNA:   3'- -UCuuaGGUGGCUAcCGGUAGCC-GUCa -5'
11926 5' -55.3 NC_003278.1 + 29642 0.66 0.536562
Target:  5'- cGAggCCACCGGcgaGGCCGgugcCGGCAa- -3'
miRNA:   3'- uCUuaGGUGGCUa--CCGGUa---GCCGUca -5'
11926 5' -55.3 NC_003278.1 + 31851 0.67 0.492935
Target:  5'- aGGaAAUCCGCCGc--GCCGcCGGCGGg -3'
miRNA:   3'- -UC-UUAGGUGGCuacCGGUaGCCGUCa -5'
11926 5' -55.3 NC_003278.1 + 31410 0.67 0.492935
Target:  5'- ----cCCAgCGAUGGCCAgcaagCGGCuGg -3'
miRNA:   3'- ucuuaGGUgGCUACCGGUa----GCCGuCa -5'
11926 5' -55.3 NC_003278.1 + 4952 0.67 0.48228
Target:  5'- aGGAAgCCcgcacccaaGCCGAguucGGCCAggUCGGCGGg -3'
miRNA:   3'- -UCUUaGG---------UGGCUa---CCGGU--AGCCGUCa -5'
11926 5' -55.3 NC_003278.1 + 20327 0.68 0.420886
Target:  5'- uGGAcgCCagcguuGCCGAgcagGGCCGU-GGCGGUg -3'
miRNA:   3'- -UCUuaGG------UGGCUa---CCGGUAgCCGUCA- -5'
11926 5' -55.3 NC_003278.1 + 30164 0.68 0.420886
Target:  5'- -----gCGCgGAUGGCCAUCaGCAGg -3'
miRNA:   3'- ucuuagGUGgCUACCGGUAGcCGUCa -5'
11926 5' -55.3 NC_003278.1 + 22285 0.72 0.254173
Target:  5'- -cGAUCCGCCGcgGgguGCCGUCGGCGa- -3'
miRNA:   3'- ucUUAGGUGGCuaC---CGGUAGCCGUca -5'
11926 5' -55.3 NC_003278.1 + 19027 0.73 0.21246
Target:  5'- cGggUCCauGCCGGUGGCCucgggcucggugaugGUCGGCuGg -3'
miRNA:   3'- uCuuAGG--UGGCUACCGG---------------UAGCCGuCa -5'
11926 5' -55.3 NC_003278.1 + 14367 0.8 0.074104
Target:  5'- ----aCUGCCGAUGGCCAUCGGUGGa -3'
miRNA:   3'- ucuuaGGUGGCUACCGGUAGCCGUCa -5'
11926 5' -55.3 NC_003278.1 + 14428 1.08 0.00062
Target:  5'- cAGAAUCCACCGAUGGCCAUCGGCAGUa -3'
miRNA:   3'- -UCUUAGGUGGCUACCGGUAGCCGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.