Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11927 | 3' | -55.9 | NC_003278.1 | + | 2374 | 0.68 | 0.429956 |
Target: 5'- cGGCAcGGCCACCCuGGCgcgggaugaacUCGCCuUCc -3' miRNA: 3'- aCUGUaUCGGUGGG-UCG-----------AGCGGuAGc -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 5296 | 0.69 | 0.337854 |
Target: 5'- cGGCGUGaacuccGCCGUCCAGaccuUCGCCGUCGa -3' miRNA: 3'- aCUGUAU------CGGUGGGUCg---AGCGGUAGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 7287 | 0.66 | 0.50252 |
Target: 5'- aGGCGccaGGCC-CgCAGCUCGCgGUUGa -3' miRNA: 3'- aCUGUa--UCGGuGgGUCGAGCGgUAGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 7951 | 0.67 | 0.474891 |
Target: 5'- -cGCAUGGCUgaccucaccaccaccGCCaCGGCcgCGCCAUCa -3' miRNA: 3'- acUGUAUCGG---------------UGG-GUCGa-GCGGUAGc -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 8544 | 0.67 | 0.470708 |
Target: 5'- cGGCAacgucGCCGCCCuGCUgagGCCAUCc -3' miRNA: 3'- aCUGUau---CGGUGGGuCGAg--CGGUAGc -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 8804 | 0.68 | 0.429956 |
Target: 5'- cGACcucGUcGCCGCCgGaGCUCGCC-UCGa -3' miRNA: 3'- aCUG---UAuCGGUGGgU-CGAGCGGuAGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 8969 | 0.71 | 0.28242 |
Target: 5'- aUGAUGUGGCguucgaacaggaUugCCGGCUUGCCGUUGc -3' miRNA: 3'- -ACUGUAUCG------------GugGGUCGAGCGGUAGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 9064 | 0.72 | 0.221448 |
Target: 5'- cGGCAUAGCCGCCCgggcgagGGUUCaCCAgcgCGg -3' miRNA: 3'- aCUGUAUCGGUGGG-------UCGAGcGGUa--GC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 9400 | 0.66 | 0.557456 |
Target: 5'- uUGuACAgcGCCGCCCuGCUCgguGCUcUCGg -3' miRNA: 3'- -AC-UGUauCGGUGGGuCGAG---CGGuAGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 10288 | 0.67 | 0.460331 |
Target: 5'- cGAUGUgAGUCACCCggaagagccccAGCUCaccgagGCCAUCGa -3' miRNA: 3'- aCUGUA-UCGGUGGG-----------UCGAG------CGGUAGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 10425 | 0.72 | 0.234443 |
Target: 5'- cGGCGUccacucGGCCAgC-AGCUCGCCGUUGg -3' miRNA: 3'- aCUGUA------UCGGUgGgUCGAGCGGUAGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 11869 | 0.69 | 0.363923 |
Target: 5'- cGGCAUGGuCCACCgCGGCgauggUGCCGaggCGg -3' miRNA: 3'- aCUGUAUC-GGUGG-GUCGa----GCGGUa--GC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 12232 | 0.66 | 0.513333 |
Target: 5'- gGAUGUAGUCGCCCuGGUgugugaugUCGCCGaCGa -3' miRNA: 3'- aCUGUAUCGGUGGG-UCG--------AGCGGUaGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 14826 | 0.73 | 0.204516 |
Target: 5'- aUGcCGUAGCCGCCCAGC--GUgGUCGg -3' miRNA: 3'- -ACuGUAUCGGUGGGUCGagCGgUAGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 15347 | 0.68 | 0.420095 |
Target: 5'- cGGCAUuuaCACCCgAGUUCGCCAaCGu -3' miRNA: 3'- aCUGUAucgGUGGG-UCGAGCGGUaGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 15803 | 1.1 | 0.000386 |
Target: 5'- uUGACAUAGCCACCCAGCUCGCCAUCGg -3' miRNA: 3'- -ACUGUAUCGGUGGGUCGAGCGGUAGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 18924 | 0.67 | 0.460331 |
Target: 5'- -uGCA-GGCCGCgCAGUUCGCCAg-- -3' miRNA: 3'- acUGUaUCGGUGgGUCGAGCGGUagc -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 19843 | 0.69 | 0.34553 |
Target: 5'- cGAUGUcGGCCACCCAGgcggugaCUCG-CAUCGa -3' miRNA: 3'- aCUGUA-UCGGUGGGUC-------GAGCgGUAGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 20680 | 0.67 | 0.450078 |
Target: 5'- cGACAagaacagccccUGGCUGCgCgAGCUCGCCGcCGa -3' miRNA: 3'- aCUGU-----------AUCGGUG-GgUCGAGCGGUaGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 20808 | 0.67 | 0.460331 |
Target: 5'- cGGCGcugaUGGCUACCguuggCAGcCUUGCCAUCa -3' miRNA: 3'- aCUGU----AUCGGUGG-----GUC-GAGCGGUAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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