Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11927 | 3' | -55.9 | NC_003278.1 | + | 34523 | 0.72 | 0.240854 |
Target: 5'- gUGGCAUGGCCACCUcaggaaugcgGGCgucCGCUcgCGu -3' miRNA: 3'- -ACUGUAUCGGUGGG----------UCGa--GCGGuaGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 32213 | 0.77 | 0.103051 |
Target: 5'- cGACugggccAGaCCGCCCAGCUCGCCgcaGUCGu -3' miRNA: 3'- aCUGua----UC-GGUGGGUCGAGCGG---UAGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 32163 | 0.68 | 0.40079 |
Target: 5'- cGGCGUagccgaAGCCACCgAGCagGCUGUUGa -3' miRNA: 3'- aCUGUA------UCGGUGGgUCGagCGGUAGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 32122 | 0.69 | 0.372917 |
Target: 5'- -aGCAgguGCCgGCCgCGGCUCGCCAgacgCGg -3' miRNA: 3'- acUGUau-CGG-UGG-GUCGAGCGGUa---GC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 30317 | 0.71 | 0.289877 |
Target: 5'- aUGACgAUGGCCcuggaGCgCCAGgaCGCCGUCa -3' miRNA: 3'- -ACUG-UAUCGG-----UG-GGUCgaGCGGUAGc -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 29819 | 0.69 | 0.372917 |
Target: 5'- cGACAacAGCCGCgCCGGCggCGCCGccaaguccuUCGa -3' miRNA: 3'- aCUGUa-UCGGUG-GGUCGa-GCGGU---------AGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 28745 | 0.67 | 0.491807 |
Target: 5'- aGACGUAGCC-CagGGCgcgCGCC-UCGg -3' miRNA: 3'- aCUGUAUCGGuGggUCGa--GCGGuAGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 25725 | 0.68 | 0.429956 |
Target: 5'- uUGACA-GGCCACCCGGCgacacgaUGUCAcCGu -3' miRNA: 3'- -ACUGUaUCGGUGGGUCGa------GCGGUaGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 22345 | 0.66 | 0.554105 |
Target: 5'- gUGAUcgAuGCCGCCCucgcccgcgugacgGGCUaccugaccagCGCCGUCGa -3' miRNA: 3'- -ACUGuaU-CGGUGGG--------------UCGA----------GCGGUAGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 22185 | 0.68 | 0.410372 |
Target: 5'- gGGCcaGGCCgACCCGGUgucaGCCAUCu -3' miRNA: 3'- aCUGuaUCGG-UGGGUCGag--CGGUAGc -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 21021 | 0.66 | 0.51442 |
Target: 5'- gGGCcUGGCCgccaACCCGGUgguccuggcaauugcCGCCGUCGu -3' miRNA: 3'- aCUGuAUCGG----UGGGUCGa--------------GCGGUAGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 20808 | 0.67 | 0.460331 |
Target: 5'- cGGCGcugaUGGCUACCguuggCAGcCUUGCCAUCa -3' miRNA: 3'- aCUGU----AUCGGUGG-----GUC-GAGCGGUAGc -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 20680 | 0.67 | 0.450078 |
Target: 5'- cGACAagaacagccccUGGCUGCgCgAGCUCGCCGcCGa -3' miRNA: 3'- aCUGU-----------AUCGGUG-GgUCGAGCGGUaGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 19843 | 0.69 | 0.34553 |
Target: 5'- cGAUGUcGGCCACCCAGgcggugaCUCG-CAUCGa -3' miRNA: 3'- aCUGUA-UCGGUGGGUC-------GAGCgGUAGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 18924 | 0.67 | 0.460331 |
Target: 5'- -uGCA-GGCCGCgCAGUUCGCCAg-- -3' miRNA: 3'- acUGUaUCGGUGgGUCGAGCGGUagc -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 15803 | 1.1 | 0.000386 |
Target: 5'- uUGACAUAGCCACCCAGCUCGCCAUCGg -3' miRNA: 3'- -ACUGUAUCGGUGGGUCGAGCGGUAGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 15347 | 0.68 | 0.420095 |
Target: 5'- cGGCAUuuaCACCCgAGUUCGCCAaCGu -3' miRNA: 3'- aCUGUAucgGUGGG-UCGAGCGGUaGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 14826 | 0.73 | 0.204516 |
Target: 5'- aUGcCGUAGCCGCCCAGC--GUgGUCGg -3' miRNA: 3'- -ACuGUAUCGGUGGGUCGagCGgUAGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 12232 | 0.66 | 0.513333 |
Target: 5'- gGAUGUAGUCGCCCuGGUgugugaugUCGCCGaCGa -3' miRNA: 3'- aCUGUAUCGGUGGG-UCG--------AGCGGUaGC- -5' |
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11927 | 3' | -55.9 | NC_003278.1 | + | 11869 | 0.69 | 0.363923 |
Target: 5'- cGGCAUGGuCCACCgCGGCgauggUGCCGaggCGg -3' miRNA: 3'- aCUGUAUC-GGUGG-GUCGa----GCGGUa--GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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