miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11927 5' -58.2 NC_003278.1 + 31631 0.68 0.302462
Target:  5'- gGCGgcGGCGCCGCaggcuucaaCCGGG-CGCGuccGCg -3'
miRNA:   3'- aCGCuuCCGUGGCG---------GGUCUaGCGU---CG- -5'
11927 5' -58.2 NC_003278.1 + 17089 0.68 0.294882
Target:  5'- gGCGguGGCuACCagGCCgAuGAUCGCGGUg -3'
miRNA:   3'- aCGCuuCCG-UGG--CGGgU-CUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 9024 0.69 0.28745
Target:  5'- aUGcCGgcGGCACCGCCgAGcaccagCGCcuGGCg -3'
miRNA:   3'- -AC-GCuuCCGUGGCGGgUCua----GCG--UCG- -5'
11927 5' -58.2 NC_003278.1 + 32152 0.69 0.280166
Target:  5'- gGCGAgcuGGGCGgucUgGCCCAG-UCGCGGa -3'
miRNA:   3'- aCGCU---UCCGU---GgCGGGUCuAGCGUCg -5'
11927 5' -58.2 NC_003278.1 + 23233 0.69 0.27303
Target:  5'- gGCGcGGGCGgCGCgCAGggCGCucuGGCg -3'
miRNA:   3'- aCGCuUCCGUgGCGgGUCuaGCG---UCG- -5'
11927 5' -58.2 NC_003278.1 + 9101 0.69 0.270918
Target:  5'- aGUuGGGGCGCCuUCCAGAUCaugggguuccacugGCAGCg -3'
miRNA:   3'- aCGcUUCCGUGGcGGGUCUAG--------------CGUCG- -5'
11927 5' -58.2 NC_003278.1 + 14155 0.69 0.266041
Target:  5'- gGCGc-GGCAgCGCU--GAUCGCGGCg -3'
miRNA:   3'- aCGCuuCCGUgGCGGguCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 20577 0.69 0.259197
Target:  5'- -cCGAGGGCgagGCCGCgaGGGUCGCcGCg -3'
miRNA:   3'- acGCUUCCG---UGGCGggUCUAGCGuCG- -5'
11927 5' -58.2 NC_003278.1 + 12701 0.69 0.25516
Target:  5'- aUGCGcuGGCGCCcaucugcagggggauGCUCAGGUugUGCGGCu -3'
miRNA:   3'- -ACGCuuCCGUGG---------------CGGGUCUA--GCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 4102 0.69 0.252497
Target:  5'- aGUGAAGGguCuuguccuucuCGCCCAGGUgGuCGGCg -3'
miRNA:   3'- aCGCUUCCguG----------GCGGGUCUAgC-GUCG- -5'
11927 5' -58.2 NC_003278.1 + 26448 0.69 0.252497
Target:  5'- cUGCGu-GGCGaaGCCCAccgCGCAGCc -3'
miRNA:   3'- -ACGCuuCCGUggCGGGUcuaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 9207 0.69 0.251835
Target:  5'- gGCGAAGGC-CUgcacgcugacguaGCCCAGG-CGCuGCc -3'
miRNA:   3'- aCGCUUCCGuGG-------------CGGGUCUaGCGuCG- -5'
11927 5' -58.2 NC_003278.1 + 32494 0.7 0.245941
Target:  5'- aGCacGGGCACCaucGCC--GGUCGCAGCa -3'
miRNA:   3'- aCGcuUCCGUGG---CGGguCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 25350 0.7 0.239526
Target:  5'- cUGCGGAuaccagggcGGUACCgGUCCAGAUCGCc-- -3'
miRNA:   3'- -ACGCUU---------CCGUGG-CGGGUCUAGCGucg -5'
11927 5' -58.2 NC_003278.1 + 7300 0.7 0.221118
Target:  5'- cGCGAucuucucaAGGCGCCagGCCCgcAGcUCGCGGUu -3'
miRNA:   3'- aCGCU--------UCCGUGG--CGGG--UCuAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 21338 0.7 0.221118
Target:  5'- gGCaGAucaAGcGCGCCGUCCAGcgCGuCGGCg -3'
miRNA:   3'- aCG-CU---UC-CGUGGCGGGUCuaGC-GUCG- -5'
11927 5' -58.2 NC_003278.1 + 7539 0.71 0.200634
Target:  5'- gUGCGggGacgcuugagaaagucGCggAUCGCCCAGcgcugGUCGCGGCg -3'
miRNA:   3'- -ACGCuuC---------------CG--UGGCGGGUC-----UAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 7230 0.71 0.182823
Target:  5'- cGCGAgcugcGGGCcuGgCGCCUugagaAGAUCGCGGCc -3'
miRNA:   3'- aCGCU-----UCCG--UgGCGGG-----UCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 25526 0.72 0.172533
Target:  5'- uUGCGguGGCugacucgGCCGCCCAGGUCGa--- -3'
miRNA:   3'- -ACGCuuCCG-------UGGCGGGUCUAGCgucg -5'
11927 5' -58.2 NC_003278.1 + 10607 0.72 0.163672
Target:  5'- cGCGcuucuguuGGCugCGCCgUAGAUCGCGGg -3'
miRNA:   3'- aCGCuu------CCGugGCGG-GUCUAGCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.