miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11927 5' -58.2 NC_003278.1 + 28768 0.67 0.386451
Target:  5'- uUGCGGuaguuGGGCugCuucgcagacguaGCCCAGggCGCGcGCc -3'
miRNA:   3'- -ACGCU-----UCCGugG------------CGGGUCuaGCGU-CG- -5'
11927 5' -58.2 NC_003278.1 + 18083 0.67 0.377391
Target:  5'- aGCGgcGGCACCGggguguaguCgUAGGUgaugCGCAGCu -3'
miRNA:   3'- aCGCuuCCGUGGC---------GgGUCUA----GCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 9049 0.67 0.377391
Target:  5'- gGCGAGGGUucACCaGCgCGGGgaacugUGCGGCc -3'
miRNA:   3'- aCGCUUCCG--UGG-CGgGUCUa-----GCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 2274 0.67 0.376493
Target:  5'- aGCGgcGGCucguaccACCGCCCGu-UCGgcCAGCa -3'
miRNA:   3'- aCGCuuCCG-------UGGCGGGUcuAGC--GUCG- -5'
11927 5' -58.2 NC_003278.1 + 28693 0.67 0.376493
Target:  5'- gGCGccGGguucguugucCAgCGCCCAGAUCaguuucgGCAGCu -3'
miRNA:   3'- aCGCuuCC----------GUgGCGGGUCUAG-------CGUCG- -5'
11927 5' -58.2 NC_003278.1 + 32712 0.67 0.368475
Target:  5'- cUGgGAcGGCccaGCCGgcaCCguGAUCGCGGCc -3'
miRNA:   3'- -ACgCUuCCG---UGGC---GGguCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 5967 0.67 0.359704
Target:  5'- cGCGGccgAGGauCACCaccagGCCCGGGUCaCGGCg -3'
miRNA:   3'- aCGCU---UCC--GUGG-----CGGGUCUAGcGUCG- -5'
11927 5' -58.2 NC_003278.1 + 11950 0.67 0.359704
Target:  5'- cGCGGucGGCGCCGgCC----CGCGGCg -3'
miRNA:   3'- aCGCUu-CCGUGGCgGGucuaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 19799 0.67 0.359704
Target:  5'- aUGCc--GGUGCCGgCCAGcgCgGCAGCg -3'
miRNA:   3'- -ACGcuuCCGUGGCgGGUCuaG-CGUCG- -5'
11927 5' -58.2 NC_003278.1 + 8823 0.67 0.359704
Target:  5'- gUGCGAGcagucaGCGCCGCCgAGG--GCGGCc -3'
miRNA:   3'- -ACGCUUc-----CGUGGCGGgUCUagCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 2079 0.67 0.357102
Target:  5'- aUGCGccgcGGCACCGaUcuggagacguucuaCCAGGUgCGCAGCu -3'
miRNA:   3'- -ACGCuu--CCGUGGC-G--------------GGUCUA-GCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 2494 0.67 0.351081
Target:  5'- cGCGggGGU-CUGCCCcucgaGCGGCu -3'
miRNA:   3'- aCGCuuCCGuGGCGGGucuagCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 12999 0.67 0.348522
Target:  5'- cGuCGAAGGUGCCGCCCgugccggaacugcuGGAguccgaCGaCAGCc -3'
miRNA:   3'- aC-GCUUCCGUGGCGGG--------------UCUa-----GC-GUCG- -5'
11927 5' -58.2 NC_003278.1 + 32447 0.67 0.342605
Target:  5'- gGCGAggucguucAGGCugCGCCa--GUCGCuGCc -3'
miRNA:   3'- aCGCU--------UCCGugGCGGgucUAGCGuCG- -5'
11927 5' -58.2 NC_003278.1 + 14967 0.68 0.334278
Target:  5'- aGCGugauGGGCGCUGCaagCCGGcUgGCAGUg -3'
miRNA:   3'- aCGCu---UCCGUGGCG---GGUCuAgCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 5078 0.68 0.334278
Target:  5'- cGCcGAGuuGCuCaCCCAGGUCGCGGCu -3'
miRNA:   3'- aCGcUUCcgUG-GcGGGUCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 9674 0.68 0.326099
Target:  5'- cGCGGAuGGcCAgCGCCUGG--CGCAGCu -3'
miRNA:   3'- aCGCUU-CC-GUgGCGGGUCuaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 27175 0.68 0.310192
Target:  5'- gGUGAAGGUGgCGCCgCAGAgcgCGUuuguGCa -3'
miRNA:   3'- aCGCUUCCGUgGCGG-GUCUa--GCGu---CG- -5'
11927 5' -58.2 NC_003278.1 + 2935 0.68 0.310192
Target:  5'- cGcCGGAGGCGCCaccaccaCCAGAccCGCGGUg -3'
miRNA:   3'- aC-GCUUCCGUGGcg-----GGUCUa-GCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 31631 0.68 0.302462
Target:  5'- gGCGgcGGCGCCGCaggcuucaaCCGGG-CGCGuccGCg -3'
miRNA:   3'- aCGCuuCCGUGGCG---------GGUCUaGCGU---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.