miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11927 5' -58.2 NC_003278.1 + 21338 0.7 0.221118
Target:  5'- gGCaGAucaAGcGCGCCGUCCAGcgCGuCGGCg -3'
miRNA:   3'- aCG-CU---UC-CGUGGCGGGUCuaGC-GUCG- -5'
11927 5' -58.2 NC_003278.1 + 25350 0.7 0.239526
Target:  5'- cUGCGGAuaccagggcGGUACCgGUCCAGAUCGCc-- -3'
miRNA:   3'- -ACGCUU---------CCGUGG-CGGGUCUAGCGucg -5'
11927 5' -58.2 NC_003278.1 + 32494 0.7 0.245941
Target:  5'- aGCacGGGCACCaucGCC--GGUCGCAGCa -3'
miRNA:   3'- aCGcuUCCGUGG---CGGguCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 4102 0.69 0.252497
Target:  5'- aGUGAAGGguCuuguccuucuCGCCCAGGUgGuCGGCg -3'
miRNA:   3'- aCGCUUCCguG----------GCGGGUCUAgC-GUCG- -5'
11927 5' -58.2 NC_003278.1 + 9024 0.69 0.28745
Target:  5'- aUGcCGgcGGCACCGCCgAGcaccagCGCcuGGCg -3'
miRNA:   3'- -AC-GCuuCCGUGGCGGgUCua----GCG--UCG- -5'
11927 5' -58.2 NC_003278.1 + 32152 0.69 0.280166
Target:  5'- gGCGAgcuGGGCGgucUgGCCCAG-UCGCGGa -3'
miRNA:   3'- aCGCU---UCCGU---GgCGGGUCuAGCGUCg -5'
11927 5' -58.2 NC_003278.1 + 9101 0.69 0.270918
Target:  5'- aGUuGGGGCGCCuUCCAGAUCaugggguuccacugGCAGCg -3'
miRNA:   3'- aCGcUUCCGUGGcGGGUCUAG--------------CGUCG- -5'
11927 5' -58.2 NC_003278.1 + 14155 0.69 0.266041
Target:  5'- gGCGc-GGCAgCGCU--GAUCGCGGCg -3'
miRNA:   3'- aCGCuuCCGUgGCGGguCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 20577 0.69 0.259197
Target:  5'- -cCGAGGGCgagGCCGCgaGGGUCGCcGCg -3'
miRNA:   3'- acGCUUCCG---UGGCGggUCUAGCGuCG- -5'
11927 5' -58.2 NC_003278.1 + 26448 0.69 0.252497
Target:  5'- cUGCGu-GGCGaaGCCCAccgCGCAGCc -3'
miRNA:   3'- -ACGCuuCCGUggCGGGUcuaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 19105 0.66 0.395654
Target:  5'- cGCGAucagggAGGCugccuUCGCCCGcuUCuGCAGCa -3'
miRNA:   3'- aCGCU------UCCGu----GGCGGGUcuAG-CGUCG- -5'
11927 5' -58.2 NC_003278.1 + 10764 0.66 0.395654
Target:  5'- cGUGAucgccuGGGCGUCGCCCuuGGcgCGCAGa -3'
miRNA:   3'- aCGCU------UCCGUGGCGGG--UCuaGCGUCg -5'
11927 5' -58.2 NC_003278.1 + 27674 0.66 0.404996
Target:  5'- gUGCuGggGGCGCUGUUugagCAGGUgCGCGGg -3'
miRNA:   3'- -ACG-CuuCCGUGGCGG----GUCUA-GCGUCg -5'
11927 5' -58.2 NC_003278.1 + 22356 0.66 0.404996
Target:  5'- gGCGGuaccgAGGaccgaGCCGagCAGAUCGguGCg -3'
miRNA:   3'- aCGCU-----UCCg----UGGCggGUCUAGCguCG- -5'
11927 5' -58.2 NC_003278.1 + 8186 0.66 0.404996
Target:  5'- cUGCGAacAGGUAgCCGaCgCAGGUCgGCAGg -3'
miRNA:   3'- -ACGCU--UCCGU-GGC-GgGUCUAG-CGUCg -5'
11927 5' -58.2 NC_003278.1 + 8754 0.66 0.414477
Target:  5'- aUGCGAacgcuggaAGGCACgcaccgCGUCCucGGUgGCGGCg -3'
miRNA:   3'- -ACGCU--------UCCGUG------GCGGGu-CUAgCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 21745 0.66 0.424093
Target:  5'- gGUGAuGGC-CUGCgCCGGggCGCuGGCg -3'
miRNA:   3'- aCGCUuCCGuGGCG-GGUCuaGCG-UCG- -5'
11927 5' -58.2 NC_003278.1 + 19429 0.66 0.427976
Target:  5'- cGCGGugcugaccugcuccaGGGCGCCGCgCUGGGU-GCGGa -3'
miRNA:   3'- aCGCU---------------UCCGUGGCG-GGUCUAgCGUCg -5'
11927 5' -58.2 NC_003278.1 + 29882 0.66 0.43384
Target:  5'- -uUGgcGGCGCCGCCgg---CGCGGCu -3'
miRNA:   3'- acGCuuCCGUGGCGGgucuaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 15769 1.12 0.000157
Target:  5'- gUGCGAAGGCACCGCCCAGAUCGCAGCg -3'
miRNA:   3'- -ACGCUUCCGUGGCGGGUCUAGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.