miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11927 5' -58.2 NC_003278.1 + 26448 0.69 0.252497
Target:  5'- cUGCGu-GGCGaaGCCCAccgCGCAGCc -3'
miRNA:   3'- -ACGCuuCCGUggCGGGUcuaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 12701 0.69 0.25516
Target:  5'- aUGCGcuGGCGCCcaucugcagggggauGCUCAGGUugUGCGGCu -3'
miRNA:   3'- -ACGCuuCCGUGG---------------CGGGUCUA--GCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 20577 0.69 0.259197
Target:  5'- -cCGAGGGCgagGCCGCgaGGGUCGCcGCg -3'
miRNA:   3'- acGCUUCCG---UGGCGggUCUAGCGuCG- -5'
11927 5' -58.2 NC_003278.1 + 14155 0.69 0.266041
Target:  5'- gGCGc-GGCAgCGCU--GAUCGCGGCg -3'
miRNA:   3'- aCGCuuCCGUgGCGGguCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 9101 0.69 0.270918
Target:  5'- aGUuGGGGCGCCuUCCAGAUCaugggguuccacugGCAGCg -3'
miRNA:   3'- aCGcUUCCGUGGcGGGUCUAG--------------CGUCG- -5'
11927 5' -58.2 NC_003278.1 + 23233 0.69 0.27303
Target:  5'- gGCGcGGGCGgCGCgCAGggCGCucuGGCg -3'
miRNA:   3'- aCGCuUCCGUgGCGgGUCuaGCG---UCG- -5'
11927 5' -58.2 NC_003278.1 + 32152 0.69 0.280166
Target:  5'- gGCGAgcuGGGCGgucUgGCCCAG-UCGCGGa -3'
miRNA:   3'- aCGCU---UCCGU---GgCGGGUCuAGCGUCg -5'
11927 5' -58.2 NC_003278.1 + 9024 0.69 0.28745
Target:  5'- aUGcCGgcGGCACCGCCgAGcaccagCGCcuGGCg -3'
miRNA:   3'- -AC-GCuuCCGUGGCGGgUCua----GCG--UCG- -5'
11927 5' -58.2 NC_003278.1 + 17089 0.68 0.294882
Target:  5'- gGCGguGGCuACCagGCCgAuGAUCGCGGUg -3'
miRNA:   3'- aCGCuuCCG-UGG--CGGgU-CUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 31631 0.68 0.302462
Target:  5'- gGCGgcGGCGCCGCaggcuucaaCCGGG-CGCGuccGCg -3'
miRNA:   3'- aCGCuuCCGUGGCG---------GGUCUaGCGU---CG- -5'
11927 5' -58.2 NC_003278.1 + 6347 0.68 0.302462
Target:  5'- cGCGAAcGCcuaugagcugcaGCuCGCCCagcuguaucaGGAUCGCAGCc -3'
miRNA:   3'- aCGCUUcCG------------UG-GCGGG----------UCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 2935 0.68 0.310192
Target:  5'- cGcCGGAGGCGCCaccaccaCCAGAccCGCGGUg -3'
miRNA:   3'- aC-GCUUCCGUGGcg-----GGUCUa-GCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 27175 0.68 0.310192
Target:  5'- gGUGAAGGUGgCGCCgCAGAgcgCGUuuguGCa -3'
miRNA:   3'- aCGCUUCCGUgGCGG-GUCUa--GCGu---CG- -5'
11927 5' -58.2 NC_003278.1 + 9674 0.68 0.326099
Target:  5'- cGCGGAuGGcCAgCGCCUGG--CGCAGCu -3'
miRNA:   3'- aCGCUU-CC-GUgGCGGGUCuaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 14967 0.68 0.334278
Target:  5'- aGCGugauGGGCGCUGCaagCCGGcUgGCAGUg -3'
miRNA:   3'- aCGCu---UCCGUGGCG---GGUCuAgCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 5078 0.68 0.334278
Target:  5'- cGCcGAGuuGCuCaCCCAGGUCGCGGCu -3'
miRNA:   3'- aCGcUUCcgUG-GcGGGUCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 32447 0.67 0.342605
Target:  5'- gGCGAggucguucAGGCugCGCCa--GUCGCuGCc -3'
miRNA:   3'- aCGCU--------UCCGugGCGGgucUAGCGuCG- -5'
11927 5' -58.2 NC_003278.1 + 12999 0.67 0.348522
Target:  5'- cGuCGAAGGUGCCGCCCgugccggaacugcuGGAguccgaCGaCAGCc -3'
miRNA:   3'- aC-GCUUCCGUGGCGGG--------------UCUa-----GC-GUCG- -5'
11927 5' -58.2 NC_003278.1 + 2494 0.67 0.351081
Target:  5'- cGCGggGGU-CUGCCCcucgaGCGGCu -3'
miRNA:   3'- aCGCuuCCGuGGCGGGucuagCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 2079 0.67 0.357102
Target:  5'- aUGCGccgcGGCACCGaUcuggagacguucuaCCAGGUgCGCAGCu -3'
miRNA:   3'- -ACGCuu--CCGUGGC-G--------------GGUCUA-GCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.