miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11927 5' -58.2 NC_003278.1 + 15769 1.12 0.000157
Target:  5'- gUGCGAAGGCACCGCCCAGAUCGCAGCg -3'
miRNA:   3'- -ACGCUUCCGUGGCGGGUCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 31680 0.82 0.028319
Target:  5'- cUGCGgcGcCGCCGCCCAGGcCGCAGCa -3'
miRNA:   3'- -ACGCuuCcGUGGCGGGUCUaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 32215 0.8 0.044357
Target:  5'- cGCGAcuGGGCcagACCGCCCAGcUCGCcGCa -3'
miRNA:   3'- aCGCU--UCCG---UGGCGGGUCuAGCGuCG- -5'
11927 5' -58.2 NC_003278.1 + 21697 0.8 0.045697
Target:  5'- gGCGccGGCGCUcuuGCCCAGGUCGCccAGCa -3'
miRNA:   3'- aCGCuuCCGUGG---CGGGUCUAGCG--UCG- -5'
11927 5' -58.2 NC_003278.1 + 29183 0.78 0.061464
Target:  5'- cGUGAAGaaCACCuucaccaguGCCCAGGUCGCGGCg -3'
miRNA:   3'- aCGCUUCc-GUGG---------CGGGUCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 25419 0.77 0.07121
Target:  5'- gGCGAucuggaccGGUACCGCCCuGGUaucCGCAGCa -3'
miRNA:   3'- aCGCUu-------CCGUGGCGGGuCUA---GCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 8439 0.76 0.083399
Target:  5'- gGCGGaagcGGGCGCCGCagcgcugguagcagaCCAGG-CGCAGCg -3'
miRNA:   3'- aCGCU----UCCGUGGCG---------------GGUCUaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 19046 0.75 0.110122
Target:  5'- gGCGAAGGCAgCCuCCCuGAUCGCGu- -3'
miRNA:   3'- aCGCUUCCGU-GGcGGGuCUAGCGUcg -5'
11927 5' -58.2 NC_003278.1 + 12389 0.74 0.113328
Target:  5'- gGCGAGGGCGCCGC-CGGuaugggcauucAUUGCGGUu -3'
miRNA:   3'- aCGCUUCCGUGGCGgGUC-----------UAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 13183 0.73 0.150512
Target:  5'- gGUGAcGGUgcagGCCGCCCAGGgcaacgGCAGCg -3'
miRNA:   3'- aCGCUuCCG----UGGCGGGUCUag----CGUCG- -5'
11927 5' -58.2 NC_003278.1 + 10607 0.72 0.163672
Target:  5'- cGCGcuucuguuGGCugCGCCgUAGAUCGCGGg -3'
miRNA:   3'- aCGCuu------CCGugGCGG-GUCUAGCGUCg -5'
11927 5' -58.2 NC_003278.1 + 25526 0.72 0.172533
Target:  5'- uUGCGguGGCugacucgGCCGCCCAGGUCGa--- -3'
miRNA:   3'- -ACGCuuCCG-------UGGCGGGUCUAGCgucg -5'
11927 5' -58.2 NC_003278.1 + 7230 0.71 0.182823
Target:  5'- cGCGAgcugcGGGCcuGgCGCCUugagaAGAUCGCGGCc -3'
miRNA:   3'- aCGCU-----UCCG--UgGCGGG-----UCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 7539 0.71 0.200634
Target:  5'- gUGCGggGacgcuugagaaagucGCggAUCGCCCAGcgcugGUCGCGGCg -3'
miRNA:   3'- -ACGCuuC---------------CG--UGGCGGGUC-----UAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 7300 0.7 0.221118
Target:  5'- cGCGAucuucucaAGGCGCCagGCCCgcAGcUCGCGGUu -3'
miRNA:   3'- aCGCU--------UCCGUGG--CGGG--UCuAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 21338 0.7 0.221118
Target:  5'- gGCaGAucaAGcGCGCCGUCCAGcgCGuCGGCg -3'
miRNA:   3'- aCG-CU---UC-CGUGGCGGGUCuaGC-GUCG- -5'
11927 5' -58.2 NC_003278.1 + 25350 0.7 0.239526
Target:  5'- cUGCGGAuaccagggcGGUACCgGUCCAGAUCGCc-- -3'
miRNA:   3'- -ACGCUU---------CCGUGG-CGGGUCUAGCGucg -5'
11927 5' -58.2 NC_003278.1 + 32494 0.7 0.245941
Target:  5'- aGCacGGGCACCaucGCC--GGUCGCAGCa -3'
miRNA:   3'- aCGcuUCCGUGG---CGGguCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 9207 0.69 0.251835
Target:  5'- gGCGAAGGC-CUgcacgcugacguaGCCCAGG-CGCuGCc -3'
miRNA:   3'- aCGCUUCCGuGG-------------CGGGUCUaGCGuCG- -5'
11927 5' -58.2 NC_003278.1 + 26448 0.69 0.252497
Target:  5'- cUGCGu-GGCGaaGCCCAccgCGCAGCc -3'
miRNA:   3'- -ACGCuuCCGUggCGGGUcuaGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.