miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11927 5' -58.2 NC_003278.1 + 2079 0.67 0.357102
Target:  5'- aUGCGccgcGGCACCGaUcuggagacguucuaCCAGGUgCGCAGCu -3'
miRNA:   3'- -ACGCuu--CCGUGGC-G--------------GGUCUA-GCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 2274 0.67 0.376493
Target:  5'- aGCGgcGGCucguaccACCGCCCGu-UCGgcCAGCa -3'
miRNA:   3'- aCGCuuCCG-------UGGCGGGUcuAGC--GUCG- -5'
11927 5' -58.2 NC_003278.1 + 2494 0.67 0.351081
Target:  5'- cGCGggGGU-CUGCCCcucgaGCGGCu -3'
miRNA:   3'- aCGCuuCCGuGGCGGGucuagCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 2935 0.68 0.310192
Target:  5'- cGcCGGAGGCGCCaccaccaCCAGAccCGCGGUg -3'
miRNA:   3'- aC-GCUUCCGUGGcg-----GGUCUa-GCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 4102 0.69 0.252497
Target:  5'- aGUGAAGGguCuuguccuucuCGCCCAGGUgGuCGGCg -3'
miRNA:   3'- aCGCUUCCguG----------GCGGGUCUAgC-GUCG- -5'
11927 5' -58.2 NC_003278.1 + 5078 0.68 0.334278
Target:  5'- cGCcGAGuuGCuCaCCCAGGUCGCGGCu -3'
miRNA:   3'- aCGcUUCcgUG-GcGGGUCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 5967 0.67 0.359704
Target:  5'- cGCGGccgAGGauCACCaccagGCCCGGGUCaCGGCg -3'
miRNA:   3'- aCGCU---UCC--GUGG-----CGGGUCUAGcGUCG- -5'
11927 5' -58.2 NC_003278.1 + 6347 0.68 0.302462
Target:  5'- cGCGAAcGCcuaugagcugcaGCuCGCCCagcuguaucaGGAUCGCAGCc -3'
miRNA:   3'- aCGCUUcCG------------UG-GCGGG----------UCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 6423 0.67 0.386451
Target:  5'- gGC-AAGGCAgCGCUCAaGGUCG-AGCu -3'
miRNA:   3'- aCGcUUCCGUgGCGGGU-CUAGCgUCG- -5'
11927 5' -58.2 NC_003278.1 + 7230 0.71 0.182823
Target:  5'- cGCGAgcugcGGGCcuGgCGCCUugagaAGAUCGCGGCc -3'
miRNA:   3'- aCGCU-----UCCG--UgGCGGG-----UCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 7300 0.7 0.221118
Target:  5'- cGCGAucuucucaAGGCGCCagGCCCgcAGcUCGCGGUu -3'
miRNA:   3'- aCGCU--------UCCGUGG--CGGG--UCuAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 7539 0.71 0.200634
Target:  5'- gUGCGggGacgcuugagaaagucGCggAUCGCCCAGcgcugGUCGCGGCg -3'
miRNA:   3'- -ACGCuuC---------------CG--UGGCGGGUC-----UAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 8186 0.66 0.404996
Target:  5'- cUGCGAacAGGUAgCCGaCgCAGGUCgGCAGg -3'
miRNA:   3'- -ACGCU--UCCGU-GGC-GgGUCUAG-CGUCg -5'
11927 5' -58.2 NC_003278.1 + 8439 0.76 0.083399
Target:  5'- gGCGGaagcGGGCGCCGCagcgcugguagcagaCCAGG-CGCAGCg -3'
miRNA:   3'- aCGCU----UCCGUGGCG---------------GGUCUaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 8667 0.66 0.43384
Target:  5'- gGCcacuucGGCGCCGCCaccgaGGA-CGCGGUg -3'
miRNA:   3'- aCGcuu---CCGUGGCGGg----UCUaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 8754 0.66 0.414477
Target:  5'- aUGCGAacgcuggaAGGCACgcaccgCGUCCucGGUgGCGGCg -3'
miRNA:   3'- -ACGCU--------UCCGUG------GCGGGu-CUAgCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 8823 0.67 0.359704
Target:  5'- gUGCGAGcagucaGCGCCGCCgAGG--GCGGCc -3'
miRNA:   3'- -ACGCUUc-----CGUGGCGGgUCUagCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 9024 0.69 0.28745
Target:  5'- aUGcCGgcGGCACCGCCgAGcaccagCGCcuGGCg -3'
miRNA:   3'- -AC-GCuuCCGUGGCGGgUCua----GCG--UCG- -5'
11927 5' -58.2 NC_003278.1 + 9049 0.67 0.377391
Target:  5'- gGCGAGGGUucACCaGCgCGGGgaacugUGCGGCc -3'
miRNA:   3'- aCGCUUCCG--UGG-CGgGUCUa-----GCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 9101 0.69 0.270918
Target:  5'- aGUuGGGGCGCCuUCCAGAUCaugggguuccacugGCAGCg -3'
miRNA:   3'- aCGcUUCCGUGGcGGGUCUAG--------------CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.