miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11927 5' -58.2 NC_003278.1 + 32712 0.67 0.368475
Target:  5'- cUGgGAcGGCccaGCCGgcaCCguGAUCGCGGCc -3'
miRNA:   3'- -ACgCUuCCG---UGGC---GGguCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 32494 0.7 0.245941
Target:  5'- aGCacGGGCACCaucGCC--GGUCGCAGCa -3'
miRNA:   3'- aCGcuUCCGUGG---CGGguCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 32447 0.67 0.342605
Target:  5'- gGCGAggucguucAGGCugCGCCa--GUCGCuGCc -3'
miRNA:   3'- aCGCU--------UCCGugGCGGgucUAGCGuCG- -5'
11927 5' -58.2 NC_003278.1 + 32215 0.8 0.044357
Target:  5'- cGCGAcuGGGCcagACCGCCCAGcUCGCcGCa -3'
miRNA:   3'- aCGCU--UCCG---UGGCGGGUCuAGCGuCG- -5'
11927 5' -58.2 NC_003278.1 + 32152 0.69 0.280166
Target:  5'- gGCGAgcuGGGCGgucUgGCCCAG-UCGCGGa -3'
miRNA:   3'- aCGCU---UCCGU---GgCGGGUCuAGCGUCg -5'
11927 5' -58.2 NC_003278.1 + 32071 0.66 0.43384
Target:  5'- cGCGGccGGCACCuGCuggaCCAGAUCaaCAGCc -3'
miRNA:   3'- aCGCUu-CCGUGG-CG----GGUCUAGc-GUCG- -5'
11927 5' -58.2 NC_003278.1 + 31680 0.82 0.028319
Target:  5'- cUGCGgcGcCGCCGCCCAGGcCGCAGCa -3'
miRNA:   3'- -ACGCuuCcGUGGCGGGUCUaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 31631 0.68 0.302462
Target:  5'- gGCGgcGGCGCCGCaggcuucaaCCGGG-CGCGuccGCg -3'
miRNA:   3'- aCGCuuCCGUGGCG---------GGUCUaGCGU---CG- -5'
11927 5' -58.2 NC_003278.1 + 31395 0.66 0.43384
Target:  5'- gGCGGcucGCACuCGCCCAgcGAUgGcCAGCa -3'
miRNA:   3'- aCGCUuc-CGUG-GCGGGU--CUAgC-GUCG- -5'
11927 5' -58.2 NC_003278.1 + 29882 0.66 0.43384
Target:  5'- -uUGgcGGCGCCGCCgg---CGCGGCu -3'
miRNA:   3'- acGCuuCCGUGGCGGgucuaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 29464 0.65 0.441731
Target:  5'- gGCGuuGGCcuucucgaucacgccGCCgcgcaccgccacgucGCCCAGAaCGUAGCa -3'
miRNA:   3'- aCGCuuCCG---------------UGG---------------CGGGUCUaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 29183 0.78 0.061464
Target:  5'- cGUGAAGaaCACCuucaccaguGCCCAGGUCGCGGCg -3'
miRNA:   3'- aCGCUUCc-GUGG---------CGGGUCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 28768 0.67 0.386451
Target:  5'- uUGCGGuaguuGGGCugCuucgcagacguaGCCCAGggCGCGcGCc -3'
miRNA:   3'- -ACGCU-----UCCGugG------------CGGGUCuaGCGU-CG- -5'
11927 5' -58.2 NC_003278.1 + 28693 0.67 0.376493
Target:  5'- gGCGccGGguucguugucCAgCGCCCAGAUCaguuucgGCAGCu -3'
miRNA:   3'- aCGCuuCC----------GUgGCGGGUCUAG-------CGUCG- -5'
11927 5' -58.2 NC_003278.1 + 28680 0.66 0.434822
Target:  5'- gGUGAccgAGGCGCgCGCCCuGGgcuacgucugcgaaGCAGCc -3'
miRNA:   3'- aCGCU---UCCGUG-GCGGGuCUag------------CGUCG- -5'
11927 5' -58.2 NC_003278.1 + 27674 0.66 0.404996
Target:  5'- gUGCuGggGGCGCUGUUugagCAGGUgCGCGGg -3'
miRNA:   3'- -ACG-CuuCCGUGGCGG----GUCUA-GCGUCg -5'
11927 5' -58.2 NC_003278.1 + 27175 0.68 0.310192
Target:  5'- gGUGAAGGUGgCGCCgCAGAgcgCGUuuguGCa -3'
miRNA:   3'- aCGCUUCCGUgGCGG-GUCUa--GCGu---CG- -5'
11927 5' -58.2 NC_003278.1 + 26834 0.66 0.43384
Target:  5'- gGCGucGcCACCGCCauCAGG-CGCGGUg -3'
miRNA:   3'- aCGCuuCcGUGGCGG--GUCUaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 26448 0.69 0.252497
Target:  5'- cUGCGu-GGCGaaGCCCAccgCGCAGCc -3'
miRNA:   3'- -ACGCuuCCGUggCGGGUcuaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 25526 0.72 0.172533
Target:  5'- uUGCGguGGCugacucgGCCGCCCAGGUCGa--- -3'
miRNA:   3'- -ACGCuuCCG-------UGGCGGGUCUAGCgucg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.