Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11927 | 5' | -58.2 | NC_003278.1 | + | 2274 | 0.67 | 0.376493 |
Target: 5'- aGCGgcGGCucguaccACCGCCCGu-UCGgcCAGCa -3' miRNA: 3'- aCGCuuCCG-------UGGCGGGUcuAGC--GUCG- -5' |
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11927 | 5' | -58.2 | NC_003278.1 | + | 32152 | 0.69 | 0.280166 |
Target: 5'- gGCGAgcuGGGCGgucUgGCCCAG-UCGCGGa -3' miRNA: 3'- aCGCU---UCCGU---GgCGGGUCuAGCGUCg -5' |
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11927 | 5' | -58.2 | NC_003278.1 | + | 9024 | 0.69 | 0.28745 |
Target: 5'- aUGcCGgcGGCACCGCCgAGcaccagCGCcuGGCg -3' miRNA: 3'- -AC-GCuuCCGUGGCGGgUCua----GCG--UCG- -5' |
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11927 | 5' | -58.2 | NC_003278.1 | + | 31631 | 0.68 | 0.302462 |
Target: 5'- gGCGgcGGCGCCGCaggcuucaaCCGGG-CGCGuccGCg -3' miRNA: 3'- aCGCuuCCGUGGCG---------GGUCUaGCGU---CG- -5' |
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11927 | 5' | -58.2 | NC_003278.1 | + | 6347 | 0.68 | 0.302462 |
Target: 5'- cGCGAAcGCcuaugagcugcaGCuCGCCCagcuguaucaGGAUCGCAGCc -3' miRNA: 3'- aCGCUUcCG------------UG-GCGGG----------UCUAGCGUCG- -5' |
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11927 | 5' | -58.2 | NC_003278.1 | + | 2935 | 0.68 | 0.310192 |
Target: 5'- cGcCGGAGGCGCCaccaccaCCAGAccCGCGGUg -3' miRNA: 3'- aC-GCUUCCGUGGcg-----GGUCUa-GCGUCG- -5' |
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11927 | 5' | -58.2 | NC_003278.1 | + | 12999 | 0.67 | 0.348522 |
Target: 5'- cGuCGAAGGUGCCGCCCgugccggaacugcuGGAguccgaCGaCAGCc -3' miRNA: 3'- aC-GCUUCCGUGGCGGG--------------UCUa-----GC-GUCG- -5' |
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11927 | 5' | -58.2 | NC_003278.1 | + | 2494 | 0.67 | 0.351081 |
Target: 5'- cGCGggGGU-CUGCCCcucgaGCGGCu -3' miRNA: 3'- aCGCuuCCGuGGCGGGucuagCGUCG- -5' |
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11927 | 5' | -58.2 | NC_003278.1 | + | 32712 | 0.67 | 0.368475 |
Target: 5'- cUGgGAcGGCccaGCCGgcaCCguGAUCGCGGCc -3' miRNA: 3'- -ACgCUuCCG---UGGC---GGguCUAGCGUCG- -5' |
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11927 | 5' | -58.2 | NC_003278.1 | + | 9101 | 0.69 | 0.270918 |
Target: 5'- aGUuGGGGCGCCuUCCAGAUCaugggguuccacugGCAGCg -3' miRNA: 3'- aCGcUUCCGUGGcGGGUCUAG--------------CGUCG- -5' |
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11927 | 5' | -58.2 | NC_003278.1 | + | 14155 | 0.69 | 0.266041 |
Target: 5'- gGCGc-GGCAgCGCU--GAUCGCGGCg -3' miRNA: 3'- aCGCuuCCGUgGCGGguCUAGCGUCG- -5' |
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11927 | 5' | -58.2 | NC_003278.1 | + | 20577 | 0.69 | 0.259197 |
Target: 5'- -cCGAGGGCgagGCCGCgaGGGUCGCcGCg -3' miRNA: 3'- acGCUUCCG---UGGCGggUCUAGCGuCG- -5' |
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11927 | 5' | -58.2 | NC_003278.1 | + | 19046 | 0.75 | 0.110122 |
Target: 5'- gGCGAAGGCAgCCuCCCuGAUCGCGu- -3' miRNA: 3'- aCGCUUCCGU-GGcGGGuCUAGCGUcg -5' |
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11927 | 5' | -58.2 | NC_003278.1 | + | 13183 | 0.73 | 0.150512 |
Target: 5'- gGUGAcGGUgcagGCCGCCCAGGgcaacgGCAGCg -3' miRNA: 3'- aCGCUuCCG----UGGCGGGUCUag----CGUCG- -5' |
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11927 | 5' | -58.2 | NC_003278.1 | + | 7230 | 0.71 | 0.182823 |
Target: 5'- cGCGAgcugcGGGCcuGgCGCCUugagaAGAUCGCGGCc -3' miRNA: 3'- aCGCU-----UCCG--UgGCGGG-----UCUAGCGUCG- -5' |
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11927 | 5' | -58.2 | NC_003278.1 | + | 21338 | 0.7 | 0.221118 |
Target: 5'- gGCaGAucaAGcGCGCCGUCCAGcgCGuCGGCg -3' miRNA: 3'- aCG-CU---UC-CGUGGCGGGUCuaGC-GUCG- -5' |
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11927 | 5' | -58.2 | NC_003278.1 | + | 25350 | 0.7 | 0.239526 |
Target: 5'- cUGCGGAuaccagggcGGUACCgGUCCAGAUCGCc-- -3' miRNA: 3'- -ACGCUU---------CCGUGG-CGGGUCUAGCGucg -5' |
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11927 | 5' | -58.2 | NC_003278.1 | + | 32494 | 0.7 | 0.245941 |
Target: 5'- aGCacGGGCACCaucGCC--GGUCGCAGCa -3' miRNA: 3'- aCGcuUCCGUGG---CGGguCUAGCGUCG- -5' |
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11927 | 5' | -58.2 | NC_003278.1 | + | 4102 | 0.69 | 0.252497 |
Target: 5'- aGUGAAGGguCuuguccuucuCGCCCAGGUgGuCGGCg -3' miRNA: 3'- aCGCUUCCguG----------GCGGGUCUAgC-GUCG- -5' |
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11927 | 5' | -58.2 | NC_003278.1 | + | 26448 | 0.69 | 0.252497 |
Target: 5'- cUGCGu-GGCGaaGCCCAccgCGCAGCc -3' miRNA: 3'- -ACGCuuCCGUggCGGGUcuaGCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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