miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11927 5' -58.2 NC_003278.1 + 9207 0.69 0.251835
Target:  5'- gGCGAAGGC-CUgcacgcugacguaGCCCAGG-CGCuGCc -3'
miRNA:   3'- aCGCUUCCGuGG-------------CGGGUCUaGCGuCG- -5'
11927 5' -58.2 NC_003278.1 + 9388 0.66 0.395654
Target:  5'- cUGCGccAGGUguuguacagcGCCGCCCuGcUCGguGCu -3'
miRNA:   3'- -ACGCu-UCCG----------UGGCGGGuCuAGCguCG- -5'
11927 5' -58.2 NC_003278.1 + 9674 0.68 0.326099
Target:  5'- cGCGGAuGGcCAgCGCCUGG--CGCAGCu -3'
miRNA:   3'- aCGCUU-CC-GUgGCGGGUCuaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 10607 0.72 0.163672
Target:  5'- cGCGcuucuguuGGCugCGCCgUAGAUCGCGGg -3'
miRNA:   3'- aCGCuu------CCGugGCGG-GUCUAGCGUCg -5'
11927 5' -58.2 NC_003278.1 + 10764 0.66 0.395654
Target:  5'- cGUGAucgccuGGGCGUCGCCCuuGGcgCGCAGa -3'
miRNA:   3'- aCGCU------UCCGUGGCGGG--UCuaGCGUCg -5'
11927 5' -58.2 NC_003278.1 + 11950 0.67 0.359704
Target:  5'- cGCGGucGGCGCCGgCC----CGCGGCg -3'
miRNA:   3'- aCGCUu-CCGUGGCgGGucuaGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 12389 0.74 0.113328
Target:  5'- gGCGAGGGCGCCGC-CGGuaugggcauucAUUGCGGUu -3'
miRNA:   3'- aCGCUUCCGUGGCGgGUC-----------UAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 12701 0.69 0.25516
Target:  5'- aUGCGcuGGCGCCcaucugcagggggauGCUCAGGUugUGCGGCu -3'
miRNA:   3'- -ACGCuuCCGUGG---------------CGGGUCUA--GCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 12924 0.66 0.424093
Target:  5'- aGCGcccAGGGCGCUGaccucgaCCAGcUCGCcGCg -3'
miRNA:   3'- aCGC---UUCCGUGGCg------GGUCuAGCGuCG- -5'
11927 5' -58.2 NC_003278.1 + 12999 0.67 0.348522
Target:  5'- cGuCGAAGGUGCCGCCCgugccggaacugcuGGAguccgaCGaCAGCc -3'
miRNA:   3'- aC-GCUUCCGUGGCGGG--------------UCUa-----GC-GUCG- -5'
11927 5' -58.2 NC_003278.1 + 13183 0.73 0.150512
Target:  5'- gGUGAcGGUgcagGCCGCCCAGGgcaacgGCAGCg -3'
miRNA:   3'- aCGCUuCCG----UGGCGGGUCUag----CGUCG- -5'
11927 5' -58.2 NC_003278.1 + 14155 0.69 0.266041
Target:  5'- gGCGc-GGCAgCGCU--GAUCGCGGCg -3'
miRNA:   3'- aCGCuuCCGUgGCGGguCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 14967 0.68 0.334278
Target:  5'- aGCGugauGGGCGCUGCaagCCGGcUgGCAGUg -3'
miRNA:   3'- aCGCu---UCCGUGGCG---GGUCuAgCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 15769 1.12 0.000157
Target:  5'- gUGCGAAGGCACCGCCCAGAUCGCAGCg -3'
miRNA:   3'- -ACGCUUCCGUGGCGGGUCUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 16773 0.67 0.386451
Target:  5'- aGCGccuGGUACUGCUCAGugcugagcGUCGUGGUa -3'
miRNA:   3'- aCGCuu-CCGUGGCGGGUC--------UAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 17089 0.68 0.294882
Target:  5'- gGCGguGGCuACCagGCCgAuGAUCGCGGUg -3'
miRNA:   3'- aCGCuuCCG-UGG--CGGgU-CUAGCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 17557 0.66 0.395654
Target:  5'- uUGCccAGGCACUgggcuugcguGCCCGGAUCGauCAGg -3'
miRNA:   3'- -ACGcuUCCGUGG----------CGGGUCUAGC--GUCg -5'
11927 5' -58.2 NC_003278.1 + 18083 0.67 0.377391
Target:  5'- aGCGgcGGCACCGggguguaguCgUAGGUgaugCGCAGCu -3'
miRNA:   3'- aCGCuuCCGUGGC---------GgGUCUA----GCGUCG- -5'
11927 5' -58.2 NC_003278.1 + 19046 0.75 0.110122
Target:  5'- gGCGAAGGCAgCCuCCCuGAUCGCGu- -3'
miRNA:   3'- aCGCUUCCGU-GGcGGGuCUAGCGUcg -5'
11927 5' -58.2 NC_003278.1 + 19105 0.66 0.395654
Target:  5'- cGCGAucagggAGGCugccuUCGCCCGcuUCuGCAGCa -3'
miRNA:   3'- aCGCU------UCCGu----GGCGGGUcuAG-CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.