miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11929 3' -60.9 NC_003278.1 + 20275 0.67 0.251087
Target:  5'- -cGGCAAC-GCUGGCGUccaGGGCAgcaUGGc -3'
miRNA:   3'- acCCGUUGuCGACCGCG---UCCGU---GCCa -5'
11929 3' -60.9 NC_003278.1 + 21467 0.66 0.293002
Target:  5'- aGGGCcuCGGCgccGGC-CAGGC-CGGc -3'
miRNA:   3'- aCCCGuuGUCGa--CCGcGUCCGuGCCa -5'
11929 3' -60.9 NC_003278.1 + 21643 0.66 0.264482
Target:  5'- cUGGGCAAgAGCgccGGCGCcaucGGUGCccuGGUg -3'
miRNA:   3'- -ACCCGUUgUCGa--CCGCGu---CCGUG---CCA- -5'
11929 3' -60.9 NC_003278.1 + 22116 0.68 0.192332
Target:  5'- -cGGCAGCAGCacGC-CGGGCAgGGUg -3'
miRNA:   3'- acCCGUUGUCGacCGcGUCCGUgCCA- -5'
11929 3' -60.9 NC_003278.1 + 28087 0.68 0.21424
Target:  5'- cUGGuCGACAGCcccUGGUucauccgcuGCGGGCGCGGc -3'
miRNA:   3'- -ACCcGUUGUCG---ACCG---------CGUCCGUGCCa -5'
11929 3' -60.9 NC_003278.1 + 28421 0.71 0.130473
Target:  5'- cGGGCGACAGCccGCGC-GGCGucUGGUg -3'
miRNA:   3'- aCCCGUUGUCGacCGCGuCCGU--GCCA- -5'
11929 3' -60.9 NC_003278.1 + 29382 0.67 0.238255
Target:  5'- cUGGGCGACG--UGGCGguG-CGCGGc -3'
miRNA:   3'- -ACCCGUUGUcgACCGCguCcGUGCCa -5'
11929 3' -60.9 NC_003278.1 + 29811 0.7 0.154355
Target:  5'- cUGGGuCAGcCAGC-GGCGCAGGCccgccuUGGUc -3'
miRNA:   3'- -ACCC-GUU-GUCGaCCGCGUCCGu-----GCCA- -5'
11929 3' -60.9 NC_003278.1 + 30350 0.68 0.21424
Target:  5'- aGGGU--CuGCUGaGCGCAGGCGagcUGGUg -3'
miRNA:   3'- aCCCGuuGuCGAC-CGCGUCCGU---GCCA- -5'
11929 3' -60.9 NC_003278.1 + 30859 0.73 0.090006
Target:  5'- cUGGGCGaucgGCAGCaGGCGUuucaGCGCGGUg -3'
miRNA:   3'- -ACCCGU----UGUCGaCCGCGuc--CGUGCCA- -5'
11929 3' -60.9 NC_003278.1 + 31628 0.71 0.116496
Target:  5'- cUGGGCGGCGGCgc-CGCAGGCuucaacCGGg -3'
miRNA:   3'- -ACCCGUUGUCGaccGCGUCCGu-----GCCa -5'
11929 3' -60.9 NC_003278.1 + 32833 0.69 0.172412
Target:  5'- aGGGCcACGG-UGGCGCGGGUccGCGa- -3'
miRNA:   3'- aCCCGuUGUCgACCGCGUCCG--UGCca -5'
11929 3' -60.9 NC_003278.1 + 33922 0.72 0.103926
Target:  5'- gUGGGUuuccacGCGGCUGGUGUAGcCGCGGa -3'
miRNA:   3'- -ACCCGu-----UGUCGACCGCGUCcGUGCCa -5'
11929 3' -60.9 NC_003278.1 + 34509 0.66 0.293002
Target:  5'- cUGcGCAACGGCUGGUGgCAuGGCcaccucaggaauGCGGg -3'
miRNA:   3'- -ACcCGUUGUCGACCGC-GU-CCG------------UGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.