Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11931 | 3' | -55.8 | NC_003278.1 | + | 16701 | 0.66 | 0.587437 |
Target: 5'- gCGUCGGugUCGUcgAGCUgGCgGUCGcGCc -3' miRNA: 3'- -GCAGCUugAGCA--UCGGgUG-CGGCuCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 10333 | 0.66 | 0.580781 |
Target: 5'- gGUCGAugggccgaugcagauGCUCGccaacggcgAGCUgCugGCCGAGUg -3' miRNA: 3'- gCAGCU---------------UGAGCa--------UCGG-GugCGGCUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 13607 | 0.66 | 0.576352 |
Target: 5'- --cCGAACUUG-AGCgCCugGCCGccgaAGCc -3' miRNA: 3'- gcaGCUUGAGCaUCG-GGugCGGC----UCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 9924 | 0.66 | 0.565315 |
Target: 5'- uGUCGAccuucgcggcgcACUCG--GCCCAgGCCaGGCc -3' miRNA: 3'- gCAGCU------------UGAGCauCGGGUgCGGcUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 9460 | 0.66 | 0.565315 |
Target: 5'- -aUCGAcCUgGcgcaggcccgccUGGCCCAgGCCGAGUu -3' miRNA: 3'- gcAGCUuGAgC------------AUCGGGUgCGGCUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 28602 | 0.67 | 0.543416 |
Target: 5'- gCGUUGGACUCaUGGCCgacacgGCGUCGAuGCc -3' miRNA: 3'- -GCAGCUUGAGcAUCGGg-----UGCGGCU-CG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 29269 | 0.67 | 0.53257 |
Target: 5'- -cUUGAACUCGcUGGCcgCCGCGaCCuGGGCa -3' miRNA: 3'- gcAGCUUGAGC-AUCG--GGUGC-GG-CUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 27228 | 0.67 | 0.521802 |
Target: 5'- -aUUGGccGCUCGaGGCCCGagggGCUGAGCu -3' miRNA: 3'- gcAGCU--UGAGCaUCGGGUg---CGGCUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 33006 | 0.67 | 0.521802 |
Target: 5'- gGUCGAuggagCGUGGCCgauccgcgCAUGCCGAagGCg -3' miRNA: 3'- gCAGCUuga--GCAUCGG--------GUGCGGCU--CG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 14025 | 0.67 | 0.521802 |
Target: 5'- uCGUCGAGCa-GgcGCUCGaGCuCGAGCa -3' miRNA: 3'- -GCAGCUUGagCauCGGGUgCG-GCUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 29733 | 0.67 | 0.50053 |
Target: 5'- cCGUCGAAgaUGaccaaggcgGGCCUGCGCCGcuGGCu -3' miRNA: 3'- -GCAGCUUgaGCa--------UCGGGUGCGGC--UCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 21532 | 0.67 | 0.50053 |
Target: 5'- aG-CGGGC-CGgccUGGCCgGCGCCGAGg -3' miRNA: 3'- gCaGCUUGaGC---AUCGGgUGCGGCUCg -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 18479 | 0.67 | 0.50053 |
Target: 5'- cCGUCGAAaUCGUcGUUCGCGgCCG-GCa -3' miRNA: 3'- -GCAGCUUgAGCAuCGGGUGC-GGCuCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 8123 | 0.68 | 0.46937 |
Target: 5'- gGUCcuGCuUCGUgccgguggccAGCCagGCGCCGAGCa -3' miRNA: 3'- gCAGcuUG-AGCA----------UCGGg-UGCGGCUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 28131 | 0.68 | 0.449158 |
Target: 5'- uGUCGAccaggguguagaGCUCcuuuuuGCCgCACGUCGGGCa -3' miRNA: 3'- gCAGCU------------UGAGcau---CGG-GUGCGGCUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 15038 | 0.68 | 0.449158 |
Target: 5'- gCGUCaGGACUCcguugacguuuGUGGCCCcauCGaaCCGAGCu -3' miRNA: 3'- -GCAG-CUUGAG-----------CAUCGGGu--GC--GGCUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 28761 | 0.68 | 0.449158 |
Target: 5'- aGUUGGGCUgcuucgcagaCGUAGCCCAgGgCGcGCg -3' miRNA: 3'- gCAGCUUGA----------GCAUCGGGUgCgGCuCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 26694 | 0.69 | 0.39157 |
Target: 5'- uGUCGAACuucuucaggUCGaGGCCCAgG-CGGGCg -3' miRNA: 3'- gCAGCUUG---------AGCaUCGGGUgCgGCUCG- -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 3974 | 0.7 | 0.364637 |
Target: 5'- gGUCGAuuucCUUGUAGUCC-CGCCGGu- -3' miRNA: 3'- gCAGCUu---GAGCAUCGGGuGCGGCUcg -5' |
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11931 | 3' | -55.8 | NC_003278.1 | + | 9397 | 0.7 | 0.347406 |
Target: 5'- aGUUGGcguguuGCUCGUAgGCUCGCG-CGAGCu -3' miRNA: 3'- gCAGCU------UGAGCAU-CGGGUGCgGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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