miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11935 3' -59.1 NC_003278.1 + 17111 0.66 0.437704
Target:  5'- aGGCggUGGCGuCGGCGUCuucgGCgGUGGc -3'
miRNA:   3'- aCCG--GCUGU-GCCGCAGcua-CGgCACC- -5'
11935 3' -59.1 NC_003278.1 + 19889 0.66 0.437704
Target:  5'- gUGGCCGACAUcguuGCGUCGAacUCGUa- -3'
miRNA:   3'- -ACCGGCUGUGc---CGCAGCUacGGCAcc -5'
11935 3' -59.1 NC_003278.1 + 15003 0.66 0.437704
Target:  5'- cUGGCCaACucCGGCGUCaccGCCG-GGa -3'
miRNA:   3'- -ACCGGcUGu-GCCGCAGcuaCGGCaCC- -5'
11935 3' -59.1 NC_003278.1 + 17076 0.67 0.382235
Target:  5'- aGGCCGAugauCGCGGUGgCGAUGgUGcgaaUGGg -3'
miRNA:   3'- aCCGGCU----GUGCCGCaGCUACgGC----ACC- -5'
11935 3' -59.1 NC_003278.1 + 30025 0.67 0.376951
Target:  5'- aGGCCuGCACcguGGCGUUcuggcucaucaccagGGUGCCGcGGa -3'
miRNA:   3'- aCCGGcUGUG---CCGCAG---------------CUACGGCaCC- -5'
11935 3' -59.1 NC_003278.1 + 16719 0.67 0.373456
Target:  5'- cGGUgacgugCGAcCAgGGCGUCGGUGUCGUc- -3'
miRNA:   3'- aCCG------GCU-GUgCCGCAGCUACGGCAcc -5'
11935 3' -59.1 NC_003278.1 + 5731 0.67 0.364814
Target:  5'- gUGGuaGcCGCGGCGcUGGUGCCGUu- -3'
miRNA:   3'- -ACCggCuGUGCCGCaGCUACGGCAcc -5'
11935 3' -59.1 NC_003278.1 + 30248 0.67 0.364814
Target:  5'- cUGGUCGACGCGcuGCGccuggUGGUGCCGcUGu -3'
miRNA:   3'- -ACCGGCUGUGC--CGCa----GCUACGGC-ACc -5'
11935 3' -59.1 NC_003278.1 + 13180 0.67 0.363958
Target:  5'- -cGCCGACGCgaccgucGGCGgCGcgGgCGUGGa -3'
miRNA:   3'- acCGGCUGUG-------CCGCaGCuaCgGCACC- -5'
11935 3' -59.1 NC_003278.1 + 14163 0.67 0.356312
Target:  5'- aGcGCUGAuCGCGGCGagCGAgGCCG-GGa -3'
miRNA:   3'- aC-CGGCU-GUGCCGCa-GCUaCGGCaCC- -5'
11935 3' -59.1 NC_003278.1 + 22180 0.68 0.339729
Target:  5'- aGGCCGACcCGGUGUCagccaucUGCCGc-- -3'
miRNA:   3'- aCCGGCUGuGCCGCAGcu-----ACGGCacc -5'
11935 3' -59.1 NC_003278.1 + 11865 0.68 0.331649
Target:  5'- aUGGUCcacCGCGGCGaUGGUGCCGaGGc -3'
miRNA:   3'- -ACCGGcu-GUGCCGCaGCUACGGCaCC- -5'
11935 3' -59.1 NC_003278.1 + 19035 0.68 0.331649
Target:  5'- aGGUCGGC-CGG-GUCcAUGCCgGUGGc -3'
miRNA:   3'- aCCGGCUGuGCCgCAGcUACGG-CACC- -5'
11935 3' -59.1 NC_003278.1 + 9621 0.68 0.329253
Target:  5'- gGGCCuGGCgcucgcgggaaaggGCGGCcUCGAggGCCGUGa -3'
miRNA:   3'- aCCGG-CUG--------------UGCCGcAGCUa-CGGCACc -5'
11935 3' -59.1 NC_003278.1 + 21666 0.68 0.323712
Target:  5'- aUGGCCaGCAgCGGCuggucgaacGUCGGUGgCGUGa -3'
miRNA:   3'- -ACCGGcUGU-GCCG---------CAGCUACgGCACc -5'
11935 3' -59.1 NC_003278.1 + 7878 0.68 0.315917
Target:  5'- gGGCCGugGuCGGCcag---GCCGUGGu -3'
miRNA:   3'- aCCGGCugU-GCCGcagcuaCGGCACC- -5'
11935 3' -59.1 NC_003278.1 + 31867 0.68 0.308265
Target:  5'- -cGCCGGCG-GGCGcCGAccggaUGCCGUGu -3'
miRNA:   3'- acCGGCUGUgCCGCaGCU-----ACGGCACc -5'
11935 3' -59.1 NC_003278.1 + 1603 0.68 0.308265
Target:  5'- aGGCCGGCGagcUGGuCGUCGcgGCUGa-- -3'
miRNA:   3'- aCCGGCUGU---GCC-GCAGCuaCGGCacc -5'
11935 3' -59.1 NC_003278.1 + 19789 0.68 0.308265
Target:  5'- cGGCCaGCGCGGCagcgcucUgGAUGCCGcGGc -3'
miRNA:   3'- aCCGGcUGUGCCGc------AgCUACGGCaCC- -5'
11935 3' -59.1 NC_003278.1 + 20261 0.68 0.300755
Target:  5'- cGGCCGACGcCGGCGgaguacuucagCGAgucGCCGa-- -3'
miRNA:   3'- aCCGGCUGU-GCCGCa----------GCUa--CGGCacc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.