Results 1 - 20 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11939 | 3' | -62.8 | NC_003278.1 | + | 2993 | 0.68 | 0.157801 |
Target: 5'- cCAGCcacaccuGGCgAUCACCGaacGGcCGCAGCGCGa -3' miRNA: 3'- uGUCG-------CCG-UGGUGGU---CC-GCGUCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 11819 | 0.7 | 0.127006 |
Target: 5'- cGCGGUGG-ACCAUgccGCGCAGCGCGu -3' miRNA: 3'- -UGUCGCCgUGGUGgucCGCGUCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 19750 | 0.69 | 0.130573 |
Target: 5'- -uGGcCGGCACCGgCAuGGCGgCAcGCGCGa -3' miRNA: 3'- ugUC-GCCGUGGUgGU-CCGC-GU-CGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 18220 | 0.69 | 0.134232 |
Target: 5'- gACGGCGGUAgCUACCAGG-GCGuCGUGa -3' miRNA: 3'- -UGUCGCCGU-GGUGGUCCgCGUcGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 2053 | 0.69 | 0.134232 |
Target: 5'- cCAGCGGCGCCugCAGcG-GCAuccGCGUa -3' miRNA: 3'- uGUCGCCGUGGugGUC-CgCGU---CGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 6311 | 0.69 | 0.134232 |
Target: 5'- gGCGGCGGCcacuGCCccgcACCAGG-GCauggaaGGCGCGa -3' miRNA: 3'- -UGUCGCCG----UGG----UGGUCCgCG------UCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 21652 | 0.69 | 0.136849 |
Target: 5'- aGCGcCGGCGCCAUCGgugcccuggugcucGGCGCcAGCGCc -3' miRNA: 3'- -UGUcGCCGUGGUGGU--------------CCGCG-UCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 1752 | 0.69 | 0.141834 |
Target: 5'- --cGCGGUcuucAgCGCCGuGCGCAGCGCGu -3' miRNA: 3'- uguCGCCG----UgGUGGUcCGCGUCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 32590 | 0.69 | 0.149011 |
Target: 5'- uACGGCGuGCGCCGCUggaccgacaccucGGGCGCcaucaucGGCGUc -3' miRNA: 3'- -UGUCGC-CGUGGUGG-------------UCCGCG-------UCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 12281 | 0.7 | 0.11684 |
Target: 5'- cACGGCGGCGucaUACCGGGCG--GCGCu -3' miRNA: 3'- -UGUCGCCGUg--GUGGUCCGCguCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 32491 | 0.7 | 0.11684 |
Target: 5'- gACAGCacgGGCACCAUCGccGGuCGCAGCaGCc -3' miRNA: 3'- -UGUCG---CCGUGGUGGU--CC-GCGUCG-CGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 31135 | 0.71 | 0.101569 |
Target: 5'- cCAGCGGaCAaacacCCGCCuGGCGCccAGCGCc -3' miRNA: 3'- uGUCGCC-GU-----GGUGGuCCGCG--UCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 31631 | 0.8 | 0.018952 |
Target: 5'- gGCGGCGGCGCCgcaggcuucaACCGGGCGCGucCGCGg -3' miRNA: 3'- -UGUCGCCGUGG----------UGGUCCGCGUc-GCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 9608 | 0.77 | 0.036105 |
Target: 5'- gGCAGCaGCugCGCCAGGCGCuGGCcauccGCGa -3' miRNA: 3'- -UGUCGcCGugGUGGUCCGCG-UCG-----CGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 9027 | 0.75 | 0.04426 |
Target: 5'- cCGGCGGCACCGCCGaGCacCAGCGCc -3' miRNA: 3'- uGUCGCCGUGGUGGUcCGc-GUCGCGc -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 21758 | 0.75 | 0.047451 |
Target: 5'- uCGGCGGCgacacuuacuacaucACCAuCCAGGC-CGGCGCGg -3' miRNA: 3'- uGUCGCCG---------------UGGU-GGUCCGcGUCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 8664 | 0.75 | 0.05116 |
Target: 5'- gACGGCcacuucGGCGCCGCCaccgAGGaCGCGGUGCGu -3' miRNA: 3'- -UGUCG------CCGUGGUGG----UCC-GCGUCGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 14131 | 0.74 | 0.057424 |
Target: 5'- uACGGCGGCcuGCuCACCGacaucGGCGCGGCaGCGc -3' miRNA: 3'- -UGUCGCCG--UG-GUGGU-----CCGCGUCG-CGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 23160 | 0.72 | 0.080989 |
Target: 5'- uACAGCG--ACCGCCAGaGCGCccuGCGCGc -3' miRNA: 3'- -UGUCGCcgUGGUGGUC-CGCGu--CGCGC- -5' |
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11939 | 3' | -62.8 | NC_003278.1 | + | 26829 | 0.72 | 0.088193 |
Target: 5'- cCAGgGGCgucgccaccGCCAUCAGGCGCGGUGa- -3' miRNA: 3'- uGUCgCCG---------UGGUGGUCCGCGUCGCgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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