miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11939 3' -62.8 NC_003278.1 + 30317 1.07 0.000123
Target:  5'- gACAGCGGCACCACCAGGCGCAGCGCGu -3'
miRNA:   3'- -UGUCGCCGUGGUGGUCCGCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 19631 0.84 0.009589
Target:  5'- gGCGGCcaauGGCGCCaucaacaGCCAGGCGCAGCGCu -3'
miRNA:   3'- -UGUCG----CCGUGG-------UGGUCCGCGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 8424 0.82 0.01454
Target:  5'- cGCAGCgcuGGUAgCagACCAGGCGCAGCGCGg -3'
miRNA:   3'- -UGUCG---CCGUgG--UGGUCCGCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 31631 0.8 0.018952
Target:  5'- gGCGGCGGCGCCgcaggcuucaACCGGGCGCGucCGCGg -3'
miRNA:   3'- -UGUCGCCGUGG----------UGGUCCGCGUc-GCGC- -5'
11939 3' -62.8 NC_003278.1 + 29881 0.79 0.021952
Target:  5'- -uGGCGGCGCCGCC-GGCGCGGCuguugucgcuGCGg -3'
miRNA:   3'- ugUCGCCGUGGUGGuCCGCGUCG----------CGC- -5'
11939 3' -62.8 NC_003278.1 + 9608 0.77 0.036105
Target:  5'- gGCAGCaGCugCGCCAGGCGCuGGCcauccGCGa -3'
miRNA:   3'- -UGUCGcCGugGUGGUCCGCG-UCG-----CGC- -5'
11939 3' -62.8 NC_003278.1 + 9027 0.75 0.04426
Target:  5'- cCGGCGGCACCGCCGaGCacCAGCGCc -3'
miRNA:   3'- uGUCGCCGUGGUGGUcCGc-GUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 21758 0.75 0.047451
Target:  5'- uCGGCGGCgacacuuacuacaucACCAuCCAGGC-CGGCGCGg -3'
miRNA:   3'- uGUCGCCG---------------UGGU-GGUCCGcGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 28493 0.75 0.049701
Target:  5'- -gGGUgGGCACCACCAGaCGCcGCGCGg -3'
miRNA:   3'- ugUCG-CCGUGGUGGUCcGCGuCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 8664 0.75 0.05116
Target:  5'- gACGGCcacuucGGCGCCGCCaccgAGGaCGCGGUGCGu -3'
miRNA:   3'- -UGUCG------CCGUGGUGG----UCC-GCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 9077 0.74 0.057259
Target:  5'- uCGGCGGUGCCGCCggcauagccgcccGGGCGaggguucacCAGCGCGg -3'
miRNA:   3'- uGUCGCCGUGGUGG-------------UCCGC---------GUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 34572 0.74 0.057424
Target:  5'- -aGGUGGCcauGCCACCAGccguuGCGCAGCGUa -3'
miRNA:   3'- ugUCGCCG---UGGUGGUC-----CGCGUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 14131 0.74 0.057424
Target:  5'- uACGGCGGCcuGCuCACCGacaucGGCGCGGCaGCGc -3'
miRNA:   3'- -UGUCGCCG--UG-GUGGU-----CCGCGUCG-CGC- -5'
11939 3' -62.8 NC_003278.1 + 21098 0.73 0.066115
Target:  5'- gACGGCGGCaauugccaggACCACCGGGUugGCggccaggccccacAGCGCGa -3'
miRNA:   3'- -UGUCGCCG----------UGGUGGUCCG--CG-------------UCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 21413 0.73 0.070217
Target:  5'- --cGCGGCGCCGCCGacGCGCuggacGGCGCGc -3'
miRNA:   3'- uguCGCCGUGGUGGUc-CGCG-----UCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 32350 0.73 0.072255
Target:  5'- cCGGCGGCgucgauAUCGCCGGGCaGCGGCauGCGg -3'
miRNA:   3'- uGUCGCCG------UGGUGGUCCG-CGUCG--CGC- -5'
11939 3' -62.8 NC_003278.1 + 22880 0.72 0.078715
Target:  5'- uCGGCaGGC-CCGCCAGcGC-CGGCGCGa -3'
miRNA:   3'- uGUCG-CCGuGGUGGUC-CGcGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 31920 0.72 0.080989
Target:  5'- cCGGuCGGCGcCCGCCGgcGGCGCGGCGg- -3'
miRNA:   3'- uGUC-GCCGU-GGUGGU--CCGCGUCGCgc -5'
11939 3' -62.8 NC_003278.1 + 23160 0.72 0.080989
Target:  5'- uACAGCG--ACCGCCAGaGCGCccuGCGCGc -3'
miRNA:   3'- -UGUCGCcgUGGUGGUC-CGCGu--CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 18083 0.72 0.085726
Target:  5'- aGCGGCGGCACCG--GGGUGUAGuCGUa -3'
miRNA:   3'- -UGUCGCCGUGGUggUCCGCGUC-GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.