miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11939 3' -62.8 NC_003278.1 + 2993 0.68 0.157801
Target:  5'- cCAGCcacaccuGGCgAUCACCGaacGGcCGCAGCGCGa -3'
miRNA:   3'- uGUCG-------CCG-UGGUGGU---CC-GCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 11819 0.7 0.127006
Target:  5'- cGCGGUGG-ACCAUgccGCGCAGCGCGu -3'
miRNA:   3'- -UGUCGCCgUGGUGgucCGCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 19750 0.69 0.130573
Target:  5'- -uGGcCGGCACCGgCAuGGCGgCAcGCGCGa -3'
miRNA:   3'- ugUC-GCCGUGGUgGU-CCGC-GU-CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 18220 0.69 0.134232
Target:  5'- gACGGCGGUAgCUACCAGG-GCGuCGUGa -3'
miRNA:   3'- -UGUCGCCGU-GGUGGUCCgCGUcGCGC- -5'
11939 3' -62.8 NC_003278.1 + 2053 0.69 0.134232
Target:  5'- cCAGCGGCGCCugCAGcG-GCAuccGCGUa -3'
miRNA:   3'- uGUCGCCGUGGugGUC-CgCGU---CGCGc -5'
11939 3' -62.8 NC_003278.1 + 6311 0.69 0.134232
Target:  5'- gGCGGCGGCcacuGCCccgcACCAGG-GCauggaaGGCGCGa -3'
miRNA:   3'- -UGUCGCCG----UGG----UGGUCCgCG------UCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 21652 0.69 0.136849
Target:  5'- aGCGcCGGCGCCAUCGgugcccuggugcucGGCGCcAGCGCc -3'
miRNA:   3'- -UGUcGCCGUGGUGGU--------------CCGCG-UCGCGc -5'
11939 3' -62.8 NC_003278.1 + 1752 0.69 0.141834
Target:  5'- --cGCGGUcuucAgCGCCGuGCGCAGCGCGu -3'
miRNA:   3'- uguCGCCG----UgGUGGUcCGCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 32590 0.69 0.149011
Target:  5'- uACGGCGuGCGCCGCUggaccgacaccucGGGCGCcaucaucGGCGUc -3'
miRNA:   3'- -UGUCGC-CGUGGUGG-------------UCCGCG-------UCGCGc -5'
11939 3' -62.8 NC_003278.1 + 12281 0.7 0.11684
Target:  5'- cACGGCGGCGucaUACCGGGCG--GCGCu -3'
miRNA:   3'- -UGUCGCCGUg--GUGGUCCGCguCGCGc -5'
11939 3' -62.8 NC_003278.1 + 32491 0.7 0.11684
Target:  5'- gACAGCacgGGCACCAUCGccGGuCGCAGCaGCc -3'
miRNA:   3'- -UGUCG---CCGUGGUGGU--CC-GCGUCG-CGc -5'
11939 3' -62.8 NC_003278.1 + 31135 0.71 0.101569
Target:  5'- cCAGCGGaCAaacacCCGCCuGGCGCccAGCGCc -3'
miRNA:   3'- uGUCGCC-GU-----GGUGGuCCGCG--UCGCGc -5'
11939 3' -62.8 NC_003278.1 + 31631 0.8 0.018952
Target:  5'- gGCGGCGGCGCCgcaggcuucaACCGGGCGCGucCGCGg -3'
miRNA:   3'- -UGUCGCCGUGG----------UGGUCCGCGUc-GCGC- -5'
11939 3' -62.8 NC_003278.1 + 9608 0.77 0.036105
Target:  5'- gGCAGCaGCugCGCCAGGCGCuGGCcauccGCGa -3'
miRNA:   3'- -UGUCGcCGugGUGGUCCGCG-UCG-----CGC- -5'
11939 3' -62.8 NC_003278.1 + 9027 0.75 0.04426
Target:  5'- cCGGCGGCACCGCCGaGCacCAGCGCc -3'
miRNA:   3'- uGUCGCCGUGGUGGUcCGc-GUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 21758 0.75 0.047451
Target:  5'- uCGGCGGCgacacuuacuacaucACCAuCCAGGC-CGGCGCGg -3'
miRNA:   3'- uGUCGCCG---------------UGGU-GGUCCGcGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 8664 0.75 0.05116
Target:  5'- gACGGCcacuucGGCGCCGCCaccgAGGaCGCGGUGCGu -3'
miRNA:   3'- -UGUCG------CCGUGGUGG----UCC-GCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 14131 0.74 0.057424
Target:  5'- uACGGCGGCcuGCuCACCGacaucGGCGCGGCaGCGc -3'
miRNA:   3'- -UGUCGCCG--UG-GUGGU-----CCGCGUCG-CGC- -5'
11939 3' -62.8 NC_003278.1 + 23160 0.72 0.080989
Target:  5'- uACAGCG--ACCGCCAGaGCGCccuGCGCGc -3'
miRNA:   3'- -UGUCGCcgUGGUGGUC-CGCGu--CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 26829 0.72 0.088193
Target:  5'- cCAGgGGCgucgccaccGCCAUCAGGCGCGGUGa- -3'
miRNA:   3'- uGUCgCCG---------UGGUGGUCCGCGUCGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.