miRNA display CGI


Results 21 - 40 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11939 3' -62.8 NC_003278.1 + 31631 0.8 0.018952
Target:  5'- gGCGGCGGCGCCgcaggcuucaACCGGGCGCGucCGCGg -3'
miRNA:   3'- -UGUCGCCGUGG----------UGGUCCGCGUc-GCGC- -5'
11939 3' -62.8 NC_003278.1 + 9608 0.77 0.036105
Target:  5'- gGCAGCaGCugCGCCAGGCGCuGGCcauccGCGa -3'
miRNA:   3'- -UGUCGcCGugGUGGUCCGCG-UCG-----CGC- -5'
11939 3' -62.8 NC_003278.1 + 9027 0.75 0.04426
Target:  5'- cCGGCGGCACCGCCGaGCacCAGCGCc -3'
miRNA:   3'- uGUCGCCGUGGUGGUcCGc-GUCGCGc -5'
11939 3' -62.8 NC_003278.1 + 21758 0.75 0.047451
Target:  5'- uCGGCGGCgacacuuacuacaucACCAuCCAGGC-CGGCGCGg -3'
miRNA:   3'- uGUCGCCG---------------UGGU-GGUCCGcGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 8664 0.75 0.05116
Target:  5'- gACGGCcacuucGGCGCCGCCaccgAGGaCGCGGUGCGu -3'
miRNA:   3'- -UGUCG------CCGUGGUGG----UCC-GCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 14131 0.74 0.057424
Target:  5'- uACGGCGGCcuGCuCACCGacaucGGCGCGGCaGCGc -3'
miRNA:   3'- -UGUCGCCG--UG-GUGGU-----CCGCGUCG-CGC- -5'
11939 3' -62.8 NC_003278.1 + 23160 0.72 0.080989
Target:  5'- uACAGCG--ACCGCCAGaGCGCccuGCGCGc -3'
miRNA:   3'- -UGUCGCcgUGGUGGUC-CGCGu--CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 26829 0.72 0.088193
Target:  5'- cCAGgGGCgucgccaccGCCAUCAGGCGCGGUGa- -3'
miRNA:   3'- uGUCgCCG---------UGGUGGUCCGCGUCGCgc -5'
11939 3' -62.8 NC_003278.1 + 2053 0.69 0.134232
Target:  5'- cCAGCGGCGCCugCAGcG-GCAuccGCGUa -3'
miRNA:   3'- uGUCGCCGUGGugGUC-CgCGU---CGCGc -5'
11939 3' -62.8 NC_003278.1 + 18220 0.69 0.134232
Target:  5'- gACGGCGGUAgCUACCAGG-GCGuCGUGa -3'
miRNA:   3'- -UGUCGCCGU-GGUGGUCCgCGUcGCGC- -5'
11939 3' -62.8 NC_003278.1 + 19750 0.69 0.130573
Target:  5'- -uGGcCGGCACCGgCAuGGCGgCAcGCGCGa -3'
miRNA:   3'- ugUC-GCCGUGGUgGU-CCGC-GU-CGCGC- -5'
11939 3' -62.8 NC_003278.1 + 11819 0.7 0.127006
Target:  5'- cGCGGUGG-ACCAUgccGCGCAGCGCGu -3'
miRNA:   3'- -UGUCGCCgUGGUGgucCGCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 12281 0.7 0.11684
Target:  5'- cACGGCGGCGucaUACCGGGCG--GCGCu -3'
miRNA:   3'- -UGUCGCCGUg--GUGGUCCGCguCGCGc -5'
11939 3' -62.8 NC_003278.1 + 32491 0.7 0.11684
Target:  5'- gACAGCacgGGCACCAUCGccGGuCGCAGCaGCc -3'
miRNA:   3'- -UGUCG---CCGUGGUGGU--CC-GCGUCG-CGc -5'
11939 3' -62.8 NC_003278.1 + 31135 0.71 0.101569
Target:  5'- cCAGCGGaCAaacacCCGCCuGGCGCccAGCGCc -3'
miRNA:   3'- uGUCGCC-GU-----GGUGGuCCGCG--UCGCGc -5'
11939 3' -62.8 NC_003278.1 + 30317 1.07 0.000123
Target:  5'- gACAGCGGCACCACCAGGCGCAGCGCGu -3'
miRNA:   3'- -UGUCGCCGUGGUGGUCCGCGUCGCGC- -5'
11939 3' -62.8 NC_003278.1 + 8109 0.66 0.248262
Target:  5'- cCGGUGGC-CaGCCAGGCGCcgagcAGgGCa -3'
miRNA:   3'- uGUCGCCGuGgUGGUCCGCG-----UCgCGc -5'
11939 3' -62.8 NC_003278.1 + 13898 0.66 0.248262
Target:  5'- uCAGCGaGCcgacgggcucgACCACgC-GGCGCAGgGCGc -3'
miRNA:   3'- uGUCGC-CG-----------UGGUG-GuCCGCGUCgCGC- -5'
11939 3' -62.8 NC_003278.1 + 3063 0.66 0.23579
Target:  5'- cGCuGCGGCcguucggugAUCGCCAGGUGUGGCuggGCu -3'
miRNA:   3'- -UGuCGCCG---------UGGUGGUCCGCGUCG---CGc -5'
11939 3' -62.8 NC_003278.1 + 19614 0.66 0.23579
Target:  5'- -gAGcCGGCGuuGCUgAGGCGCGuGCGCa -3'
miRNA:   3'- ugUC-GCCGUggUGG-UCCGCGU-CGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.