miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11941 3' -55.6 NC_003278.1 + 22996 0.67 0.500513
Target:  5'- aCCGGCCggcaggcagagcaggCAGCCGGCuuuCAcGGUGGc -3'
miRNA:   3'- cGGUCGGa--------------GUCGGUUGuu-GUcCCACC- -5'
11941 3' -55.6 NC_003278.1 + 23344 0.69 0.392701
Target:  5'- aGCaCAGCCUCAgcGCCGACGGCGGuuacaucaccagccuGGagcUGGa -3'
miRNA:   3'- -CG-GUCGGAGU--CGGUUGUUGUC---------------CC---ACC- -5'
11941 3' -55.6 NC_003278.1 + 24415 0.67 0.521045
Target:  5'- aUUAGUg-CGGCC-GCAGCAGGGUGa -3'
miRNA:   3'- cGGUCGgaGUCGGuUGUUGUCCCACc -5'
11941 3' -55.6 NC_003278.1 + 28407 0.67 0.475103
Target:  5'- gGCCcGCUUCaAGCCGgGCGACAGcccgcgcggcgucuGGUGGu -3'
miRNA:   3'- -CGGuCGGAG-UCGGU-UGUUGUC--------------CCACC- -5'
11941 3' -55.6 NC_003278.1 + 29574 0.69 0.388969
Target:  5'- aGCCAGUC-CAGCCAcu--CGGGGcGGu -3'
miRNA:   3'- -CGGUCGGaGUCGGUuguuGUCCCaCC- -5'
11941 3' -55.6 NC_003278.1 + 29791 0.66 0.587745
Target:  5'- gGCCcGCCUUGGUCAucuuCGACGGGuccUGGc -3'
miRNA:   3'- -CGGuCGGAGUCGGUu---GUUGUCCc--ACC- -5'
11941 3' -55.6 NC_003278.1 + 30053 0.71 0.31134
Target:  5'- aGCCAgGCCgCAGCCGACAACcucaaccaccuGGGcGUGc -3'
miRNA:   3'- -CGGU-CGGaGUCGGUUGUUG-----------UCC-CACc -5'
11941 3' -55.6 NC_003278.1 + 30175 0.73 0.214951
Target:  5'- cGCgGGCCUCggcgcggauGGCCAuCAGCAGGaaGUGGc -3'
miRNA:   3'- -CGgUCGGAG---------UCGGUuGUUGUCC--CACC- -5'
11941 3' -55.6 NC_003278.1 + 31533 0.67 0.48985
Target:  5'- gGCCAGCUacauggccaaccuggCGGCCAGgAaaacGCAGGGaGGg -3'
miRNA:   3'- -CGGUCGGa--------------GUCGGUUgU----UGUCCCaCC- -5'
11941 3' -55.6 NC_003278.1 + 32915 0.68 0.437247
Target:  5'- aCUGGCCUguGCCAugGGCAcuGGUGa -3'
miRNA:   3'- cGGUCGGAguCGGUugUUGUc-CCACc -5'
11941 3' -55.6 NC_003278.1 + 33171 0.67 0.467813
Target:  5'- aCCaAGCUcugCAGCgCGGCGAguucCAGGGUGGu -3'
miRNA:   3'- cGG-UCGGa--GUCG-GUUGUU----GUCCCACC- -5'
11941 3' -55.6 NC_003278.1 + 33275 0.66 0.576477
Target:  5'- cGCCggcgauGGCCUCGGCCG-CAGCc-GGcGGa -3'
miRNA:   3'- -CGG------UCGGAGUCGGUuGUUGucCCaCC- -5'
11941 3' -55.6 NC_003278.1 + 33311 1.12 0.000287
Target:  5'- cGCCAGCCUCAGCCAACAACAGGGUGGu -3'
miRNA:   3'- -CGGUCGGAGUCGGUUGUUGUCCCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.