Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11941 | 3' | -55.6 | NC_003278.1 | + | 1646 | 0.71 | 0.272849 |
Target: 5'- cGCCGGCCUgcgggucuauccgCAGCUGAUG--GGGGUGGu -3' miRNA: 3'- -CGGUCGGA-------------GUCGGUUGUugUCCCACC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 5131 | 0.69 | 0.411707 |
Target: 5'- cCCGGgaCCaCAGCCAACAGCAGcggcccccggucaccGGUGGc -3' miRNA: 3'- cGGUC--GGaGUCGGUUGUUGUC---------------CCACC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 6781 | 0.71 | 0.295772 |
Target: 5'- uGUCGGCCuggUCGGUgAGCAGgAGGGUGc -3' miRNA: 3'- -CGGUCGG---AGUCGgUUGUUgUCCCACc -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 7030 | 0.66 | 0.531984 |
Target: 5'- aUCGGCCcCgAGCCGGCGgggcGCGGGGUa- -3' miRNA: 3'- cGGUCGGaG-UCGGUUGU----UGUCCCAcc -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 7422 | 0.72 | 0.239554 |
Target: 5'- cGgUAGCgCUCGGCCAcuuCGGCGGcGGUGGc -3' miRNA: 3'- -CgGUCG-GAGUCGGUu--GUUGUC-CCACC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 8021 | 0.74 | 0.182131 |
Target: 5'- cGCCGGCCguggCggugguggugaGGUCAGCcauGCGGGGUGGu -3' miRNA: 3'- -CGGUCGGa---G-----------UCGGUUGu--UGUCCCACC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 8104 | 0.66 | 0.565259 |
Target: 5'- gGCCAGCCagGcGCCGA--GCAGGGc-- -3' miRNA: 3'- -CGGUCGGagU-CGGUUguUGUCCCacc -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 8573 | 0.68 | 0.427315 |
Target: 5'- -aCGGaagaUCAGCaggcACAGCAGGGUGGc -3' miRNA: 3'- cgGUCgg--AGUCGgu--UGUUGUCCCACC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 10166 | 0.7 | 0.35295 |
Target: 5'- aGCCAGCCgagcagCGGCagaAACAcgcuguCGGGGUGc -3' miRNA: 3'- -CGGUCGGa-----GUCGg--UUGUu-----GUCCCACc -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 12683 | 0.66 | 0.543005 |
Target: 5'- cGCCAucGaCCUCAGCCAguugccgccACcACAcGcGGUGGa -3' miRNA: 3'- -CGGU--C-GGAGUCGGU---------UGuUGU-C-CCACC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 12771 | 0.66 | 0.565259 |
Target: 5'- aUCAGCCUCuGGCCGGaggauCAGCAGGc-GGa -3' miRNA: 3'- cGGUCGGAG-UCGGUU-----GUUGUCCcaCC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 14268 | 0.71 | 0.280815 |
Target: 5'- cGCCGGCgUCA-CCGAUgAGCAuauGGGUGGg -3' miRNA: 3'- -CGGUCGgAGUcGGUUG-UUGU---CCCACC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 18336 | 0.74 | 0.197949 |
Target: 5'- cGCCcccgcggaaGGCCUCcaucuugcgGGCCAGCGgggGCAGGGUGc -3' miRNA: 3'- -CGG---------UCGGAG---------UCGGUUGU---UGUCCCACc -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 18752 | 0.69 | 0.379741 |
Target: 5'- cGCCGGCCg-GGCCGGCGGgaAGGGa-- -3' miRNA: 3'- -CGGUCGGagUCGGUUGUUg-UCCCacc -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 19671 | 0.73 | 0.226971 |
Target: 5'- cGCaa-CCUCAGCCAGCAGCAGGa--- -3' miRNA: 3'- -CGgucGGAGUCGGUUGUUGUCCcacc -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 20323 | 0.66 | 0.554099 |
Target: 5'- cGCCAGCgUU-GCCGA--GCAGGGccgUGGc -3' miRNA: 3'- -CGGUCGgAGuCGGUUguUGUCCC---ACC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 21528 | 0.66 | 0.543005 |
Target: 5'- gGCCGGCCU-GGCCGGCGcCgAGGcccUGGg -3' miRNA: 3'- -CGGUCGGAgUCGGUUGUuG-UCCc--ACC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 21672 | 0.69 | 0.378826 |
Target: 5'- cCCAGCau-GGCCAGCAGCGGcuggucgaacgucGGUGGc -3' miRNA: 3'- cGGUCGgagUCGGUUGUUGUC-------------CCACC- -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 22125 | 0.74 | 0.192547 |
Target: 5'- gGCCAGCUcCGGCagCAGCAcgccggGCAGGGUGa -3' miRNA: 3'- -CGGUCGGaGUCG--GUUGU------UGUCCCACc -5' |
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11941 | 3' | -55.6 | NC_003278.1 | + | 22649 | 0.7 | 0.335846 |
Target: 5'- uCCAGCC-CAGCCAgagguGCAgcacggcgccgcGCGGGG-GGa -3' miRNA: 3'- cGGUCGGaGUCGGU-----UGU------------UGUCCCaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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