miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11941 3' -55.6 NC_003278.1 + 33311 1.12 0.000287
Target:  5'- cGCCAGCCUCAGCCAACAACAGGGUGGu -3'
miRNA:   3'- -CGGUCGGAGUCGGUUGUUGUCCCACC- -5'
11941 3' -55.6 NC_003278.1 + 8021 0.74 0.182131
Target:  5'- cGCCGGCCguggCggugguggugaGGUCAGCcauGCGGGGUGGu -3'
miRNA:   3'- -CGGUCGGa---G-----------UCGGUUGu--UGUCCCACC- -5'
11941 3' -55.6 NC_003278.1 + 22125 0.74 0.192547
Target:  5'- gGCCAGCUcCGGCagCAGCAcgccggGCAGGGUGa -3'
miRNA:   3'- -CGGUCGGaGUCG--GUUGU------UGUCCCACc -5'
11941 3' -55.6 NC_003278.1 + 18336 0.74 0.197949
Target:  5'- cGCCcccgcggaaGGCCUCcaucuugcgGGCCAGCGgggGCAGGGUGc -3'
miRNA:   3'- -CGG---------UCGGAG---------UCGGUUGU---UGUCCCACc -5'
11941 3' -55.6 NC_003278.1 + 30175 0.73 0.214951
Target:  5'- cGCgGGCCUCggcgcggauGGCCAuCAGCAGGaaGUGGc -3'
miRNA:   3'- -CGgUCGGAG---------UCGGUuGUUGUCC--CACC- -5'
11941 3' -55.6 NC_003278.1 + 19671 0.73 0.226971
Target:  5'- cGCaa-CCUCAGCCAGCAGCAGGa--- -3'
miRNA:   3'- -CGgucGGAGUCGGUUGUUGUCCcacc -5'
11941 3' -55.6 NC_003278.1 + 7422 0.72 0.239554
Target:  5'- cGgUAGCgCUCGGCCAcuuCGGCGGcGGUGGc -3'
miRNA:   3'- -CgGUCG-GAGUCGGUu--GUUGUC-CCACC- -5'
11941 3' -55.6 NC_003278.1 + 1646 0.71 0.272849
Target:  5'- cGCCGGCCUgcgggucuauccgCAGCUGAUG--GGGGUGGu -3'
miRNA:   3'- -CGGUCGGA-------------GUCGGUUGUugUCCCACC- -5'
11941 3' -55.6 NC_003278.1 + 14268 0.71 0.280815
Target:  5'- cGCCGGCgUCA-CCGAUgAGCAuauGGGUGGg -3'
miRNA:   3'- -CGGUCGgAGUcGGUUG-UUGU---CCCACC- -5'
11941 3' -55.6 NC_003278.1 + 6781 0.71 0.295772
Target:  5'- uGUCGGCCuggUCGGUgAGCAGgAGGGUGc -3'
miRNA:   3'- -CGGUCGG---AGUCGgUUGUUgUCCCACc -5'
11941 3' -55.6 NC_003278.1 + 30053 0.71 0.31134
Target:  5'- aGCCAgGCCgCAGCCGACAACcucaaccaccuGGGcGUGc -3'
miRNA:   3'- -CGGU-CGGaGUCGGUUGUUG-----------UCC-CACc -5'
11941 3' -55.6 NC_003278.1 + 22649 0.7 0.335846
Target:  5'- uCCAGCC-CAGCCAgagguGCAgcacggcgccgcGCGGGG-GGa -3'
miRNA:   3'- cGGUCGGaGUCGGU-----UGU------------UGUCCCaCC- -5'
11941 3' -55.6 NC_003278.1 + 10166 0.7 0.35295
Target:  5'- aGCCAGCCgagcagCGGCagaAACAcgcuguCGGGGUGc -3'
miRNA:   3'- -CGGUCGGa-----GUCGg--UUGUu-----GUCCCACc -5'
11941 3' -55.6 NC_003278.1 + 21672 0.69 0.378826
Target:  5'- cCCAGCau-GGCCAGCAGCGGcuggucgaacgucGGUGGc -3'
miRNA:   3'- cGGUCGgagUCGGUUGUUGUC-------------CCACC- -5'
11941 3' -55.6 NC_003278.1 + 18752 0.69 0.379741
Target:  5'- cGCCGGCCg-GGCCGGCGGgaAGGGa-- -3'
miRNA:   3'- -CGGUCGGagUCGGUUGUUg-UCCCacc -5'
11941 3' -55.6 NC_003278.1 + 29574 0.69 0.388969
Target:  5'- aGCCAGUC-CAGCCAcu--CGGGGcGGu -3'
miRNA:   3'- -CGGUCGGaGUCGGUuguuGUCCCaCC- -5'
11941 3' -55.6 NC_003278.1 + 23344 0.69 0.392701
Target:  5'- aGCaCAGCCUCAgcGCCGACGGCGGuuacaucaccagccuGGagcUGGa -3'
miRNA:   3'- -CG-GUCGGAGU--CGGUUGUUGUC---------------CC---ACC- -5'
11941 3' -55.6 NC_003278.1 + 5131 0.69 0.411707
Target:  5'- cCCGGgaCCaCAGCCAACAGCAGcggcccccggucaccGGUGGc -3'
miRNA:   3'- cGGUC--GGaGUCGGUUGUUGUC---------------CCACC- -5'
11941 3' -55.6 NC_003278.1 + 8573 0.68 0.427315
Target:  5'- -aCGGaagaUCAGCaggcACAGCAGGGUGGc -3'
miRNA:   3'- cgGUCgg--AGUCGgu--UGUUGUCCCACC- -5'
11941 3' -55.6 NC_003278.1 + 32915 0.68 0.437247
Target:  5'- aCUGGCCUguGCCAugGGCAcuGGUGa -3'
miRNA:   3'- cGGUCGGAguCGGUugUUGUc-CCACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.