miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11941 5' -64.4 NC_003278.1 + 20046 0.68 0.1398
Target:  5'- cCGCgGGCGAcaUGGaCCUCGGCgacacUGCugacauuGCCu -3'
miRNA:   3'- -GCGgCCGCU--ACC-GGAGCCG-----GCGu------CGG- -5'
11941 5' -64.4 NC_003278.1 + 20304 0.68 0.139425
Target:  5'- gGCCguGGCGGUGGUgaccgucuccaggCUCuGGCCGUacucgcGGCCg -3'
miRNA:   3'- gCGG--CCGCUACCG-------------GAG-CCGGCG------UCGG- -5'
11941 5' -64.4 NC_003278.1 + 2580 0.69 0.137562
Target:  5'- gGCCGGCGGuauaggugaacUGGCgCccacCGGCCGUgauggucuugcggauAGCCa -3'
miRNA:   3'- gCGGCCGCU-----------ACCG-Ga---GCCGGCG---------------UCGG- -5'
11941 5' -64.4 NC_003278.1 + 22865 0.69 0.136089
Target:  5'- gCGCCGGCGcgagcaccGGCUUCaGGuuGUuGCCg -3'
miRNA:   3'- -GCGGCCGCua------CCGGAG-CCggCGuCGG- -5'
11941 5' -64.4 NC_003278.1 + 9420 0.69 0.136089
Target:  5'- gGCUcacGCGcUGGCCUCGGC-GCAGUUg -3'
miRNA:   3'- gCGGc--CGCuACCGGAGCCGgCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 19964 0.69 0.136089
Target:  5'- gGCagGGUGcgGGCCUguuGCCGCAGCg -3'
miRNA:   3'- gCGg-CCGCuaCCGGAgc-CGGCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 21277 0.69 0.136089
Target:  5'- aCGCCGGCGAaGGCg-CGGUacaucaGGCCg -3'
miRNA:   3'- -GCGGCCGCUaCCGgaGCCGgcg---UCGG- -5'
11941 5' -64.4 NC_003278.1 + 2995 0.69 0.136089
Target:  5'- aGCCacaccuGGCGAUcaCCgaaCGGCCGCAGCg -3'
miRNA:   3'- gCGG------CCGCUAccGGa--GCCGGCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 13209 0.69 0.132469
Target:  5'- gGCaGGCGAUGGgCUgaCGGCCGaGGCa -3'
miRNA:   3'- gCGgCCGCUACCgGA--GCCGGCgUCGg -5'
11941 5' -64.4 NC_003278.1 + 7446 0.69 0.132469
Target:  5'- cCGCUGGUGGUGGUgUCGuaccaGCgGUAGCg -3'
miRNA:   3'- -GCGGCCGCUACCGgAGC-----CGgCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 1647 0.69 0.132469
Target:  5'- uCGCCGGCcuGcgGGUCUau-CCGCAGCUg -3'
miRNA:   3'- -GCGGCCG--CuaCCGGAgccGGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 6699 0.69 0.128938
Target:  5'- gGCCucGGCGAUcuCUUCGGCgaugaCGCAGCCg -3'
miRNA:   3'- gCGG--CCGCUAccGGAGCCG-----GCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 14631 0.69 0.122136
Target:  5'- gGCCGGCaacGGCCuggUCGGCgGUGGCg -3'
miRNA:   3'- gCGGCCGcuaCCGG---AGCCGgCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 22060 0.69 0.122136
Target:  5'- gCGCCGGCug-GGCaccgaugCGGCUGCuGCUg -3'
miRNA:   3'- -GCGGCCGcuaCCGga-----GCCGGCGuCGG- -5'
11941 5' -64.4 NC_003278.1 + 21789 0.69 0.118861
Target:  5'- gGCCGGCGcgGGCagCGacaCCGCAGaCCu -3'
miRNA:   3'- gCGGCCGCuaCCGgaGCc--GGCGUC-GG- -5'
11941 5' -64.4 NC_003278.1 + 22822 0.7 0.115668
Target:  5'- gCGCCGGCGcuggcgGGCCUgcCGaucCUGCAGCUg -3'
miRNA:   3'- -GCGGCCGCua----CCGGA--GCc--GGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 5049 0.7 0.112555
Target:  5'- uGCuCGGCGAUcgcuucgacGGCCUCG-CCGaccuGGCCg -3'
miRNA:   3'- gCG-GCCGCUA---------CCGGAGCcGGCg---UCGG- -5'
11941 5' -64.4 NC_003278.1 + 6194 0.7 0.106563
Target:  5'- aCGUCGuCGAggacuacGGCCUCGGCUGCcuGGUCg -3'
miRNA:   3'- -GCGGCcGCUa------CCGGAGCCGGCG--UCGG- -5'
11941 5' -64.4 NC_003278.1 + 19030 0.7 0.106563
Target:  5'- gGCCGGguccaugcCGGUGGCCUCGGgCuCGGUg -3'
miRNA:   3'- gCGGCC--------GCUACCGGAGCCgGcGUCGg -5'
11941 5' -64.4 NC_003278.1 + 26 0.7 0.103681
Target:  5'- gCGCCGGCGaAUGaGCCgaugCGGCCaGgAaacGCCa -3'
miRNA:   3'- -GCGGCCGC-UAC-CGGa---GCCGG-CgU---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.