miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11941 5' -64.4 NC_003278.1 + 33276 1.11 0.00005
Target:  5'- aCGCCGGCGAUGGCCUCGGCCGCAGCCg -3'
miRNA:   3'- -GCGGCCGCUACCGGAGCCGGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 13137 0.88 0.003671
Target:  5'- gCGUCGGCGAU-GCCUCGGCCGuCAGCCc -3'
miRNA:   3'- -GCGGCCGCUAcCGGAGCCGGC-GUCGG- -5'
11941 5' -64.4 NC_003278.1 + 32261 0.81 0.013473
Target:  5'- cCGUCGGCGAcauCCUCGGCCGCAuGCCg -3'
miRNA:   3'- -GCGGCCGCUaccGGAGCCGGCGU-CGG- -5'
11941 5' -64.4 NC_003278.1 + 31254 0.77 0.03186
Target:  5'- aGCCuGGCGGcgGGCCUCGGguaucugcucuCCGCAGUCc -3'
miRNA:   3'- gCGG-CCGCUa-CCGGAGCC-----------GGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 4796 0.76 0.034705
Target:  5'- aGUCGGUGAUGGCCa-GGCCGaccaaguaGGCCu -3'
miRNA:   3'- gCGGCCGCUACCGGagCCGGCg-------UCGG- -5'
11941 5' -64.4 NC_003278.1 + 5909 0.76 0.035708
Target:  5'- gGCCuGGUGGUGauCCUCGGCCGCgAGCUg -3'
miRNA:   3'- gCGG-CCGCUACc-GGAGCCGGCG-UCGG- -5'
11941 5' -64.4 NC_003278.1 + 21453 0.75 0.043568
Target:  5'- gGCCGGCcuggcccagGGCCUCGGCgC-CGGCCa -3'
miRNA:   3'- gCGGCCGcua------CCGGAGCCG-GcGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 2358 0.74 0.051632
Target:  5'- cCGaaGGUGAaGGCCUCGGCa-CGGCCa -3'
miRNA:   3'- -GCggCCGCUaCCGGAGCCGgcGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 19487 0.73 0.061139
Target:  5'- uGCCGGCGgcGGCCaUCuGCUG-AGCCa -3'
miRNA:   3'- gCGGCCGCuaCCGG-AGcCGGCgUCGG- -5'
11941 5' -64.4 NC_003278.1 + 32968 0.73 0.061139
Target:  5'- cCGCCGGCGc-GGUgUCGGCCagugcGCGGCa -3'
miRNA:   3'- -GCGGCCGCuaCCGgAGCCGG-----CGUCGg -5'
11941 5' -64.4 NC_003278.1 + 14333 0.72 0.068205
Target:  5'- gCGCUGGCGAaucagcuUGGUCUgagCGGCCGaggggaugggguCAGCCg -3'
miRNA:   3'- -GCGGCCGCU-------ACCGGA---GCCGGC------------GUCGG- -5'
11941 5' -64.4 NC_003278.1 + 30935 0.72 0.070336
Target:  5'- gGUCGaaGCGGUGGgCUUGGCCGUuguacaGGCCg -3'
miRNA:   3'- gCGGC--CGCUACCgGAGCCGGCG------UCGG- -5'
11941 5' -64.4 NC_003278.1 + 15355 0.72 0.076479
Target:  5'- cCGgUGGCGGUGGCCUgaCGGCaGCAGaCa -3'
miRNA:   3'- -GCgGCCGCUACCGGA--GCCGgCGUCgG- -5'
11941 5' -64.4 NC_003278.1 + 22017 0.72 0.076479
Target:  5'- aGCCGGCGc--GCCaguucgUCGGUCGCGGCg -3'
miRNA:   3'- gCGGCCGCuacCGG------AGCCGGCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 30125 0.72 0.076479
Target:  5'- aCGCCcaGGUGGUugaGGUUgUCGGCUGCGGCCu -3'
miRNA:   3'- -GCGG--CCGCUA---CCGG-AGCCGGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 11947 0.72 0.080857
Target:  5'- gGUCGGCGccGGCCcgCGGCgaugcccaagGCAGCCa -3'
miRNA:   3'- gCGGCCGCuaCCGGa-GCCGg---------CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 20889 0.71 0.082904
Target:  5'- uGCCGGCGAgggugaUGGCaa-GGCUGCcaacgguAGCCa -3'
miRNA:   3'- gCGGCCGCU------ACCGgagCCGGCG-------UCGG- -5'
11941 5' -64.4 NC_003278.1 + 20211 0.71 0.083134
Target:  5'- cCGCCGGCGucGGCCgcgaguaCGGCCagAGCCu -3'
miRNA:   3'- -GCGGCCGCuaCCGGa------GCCGGcgUCGG- -5'
11941 5' -64.4 NC_003278.1 + 17502 0.71 0.087874
Target:  5'- uCGCgguaGGCGGUGGCCUCuuCCuuugucuuGCAGCCg -3'
miRNA:   3'- -GCGg---CCGCUACCGGAGccGG--------CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 29704 0.71 0.087874
Target:  5'- uGCCGGCaccGGCCUC-GCCgGUGGCCu -3'
miRNA:   3'- gCGGCCGcuaCCGGAGcCGG-CGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.