miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11941 5' -64.4 NC_003278.1 + 22955 0.68 0.151495
Target:  5'- gGCCGGUGgcGGCaagaCuGCCaGCGGCCu -3'
miRNA:   3'- gCGGCCGCuaCCGga--GcCGG-CGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 6194 0.7 0.106563
Target:  5'- aCGUCGuCGAggacuacGGCCUCGGCUGCcuGGUCg -3'
miRNA:   3'- -GCGGCcGCUa------CCGGAGCCGGCG--UCGG- -5'
11941 5' -64.4 NC_003278.1 + 22822 0.7 0.115668
Target:  5'- gCGCCGGCGcuggcgGGCCUgcCGaucCUGCAGCUg -3'
miRNA:   3'- -GCGGCCGCua----CCGGA--GCc--GGCGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 21789 0.69 0.118861
Target:  5'- gGCCGGCGcgGGCagCGacaCCGCAGaCCu -3'
miRNA:   3'- gCGGCCGCuaCCGgaGCc--GGCGUC-GG- -5'
11941 5' -64.4 NC_003278.1 + 14631 0.69 0.122136
Target:  5'- gGCCGGCaacGGCCuggUCGGCgGUGGCg -3'
miRNA:   3'- gCGGCCGcuaCCGG---AGCCGgCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 2995 0.69 0.136089
Target:  5'- aGCCacaccuGGCGAUcaCCgaaCGGCCGCAGCg -3'
miRNA:   3'- gCGG------CCGCUAccGGa--GCCGGCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 2580 0.69 0.137562
Target:  5'- gGCCGGCGGuauaggugaacUGGCgCccacCGGCCGUgauggucuugcggauAGCCa -3'
miRNA:   3'- gCGGCCGCU-----------ACCG-Ga---GCCGGCG---------------UCGG- -5'
11941 5' -64.4 NC_003278.1 + 20046 0.68 0.1398
Target:  5'- cCGCgGGCGAcaUGGaCCUCGGCgacacUGCugacauuGCCu -3'
miRNA:   3'- -GCGgCCGCU--ACC-GGAGCCG-----GCGu------CGG- -5'
11941 5' -64.4 NC_003278.1 + 13053 0.68 0.143603
Target:  5'- aGCgGGCgcaGAUGGCCUgggaaGGCCuCAGCa -3'
miRNA:   3'- gCGgCCG---CUACCGGAg----CCGGcGUCGg -5'
11941 5' -64.4 NC_003278.1 + 26 0.7 0.103681
Target:  5'- gCGCCGGCGaAUGaGCCgaugCGGCCaGgAaacGCCa -3'
miRNA:   3'- -GCGGCCGC-UAC-CGGa---GCCGG-CgU---CGG- -5'
11941 5' -64.4 NC_003278.1 + 14236 0.7 0.098135
Target:  5'- gCGcCCGGCGAgacGGCugaccccaucccCUCGGCCGCucAGaCCa -3'
miRNA:   3'- -GC-GGCCGCUa--CCG------------GAGCCGGCG--UC-GG- -5'
11941 5' -64.4 NC_003278.1 + 1604 0.71 0.089346
Target:  5'- gGCCGGCGAgcUGGUCgucgCGGCUGauguucuugauugAGCCg -3'
miRNA:   3'- gCGGCCGCU--ACCGGa---GCCGGCg------------UCGG- -5'
11941 5' -64.4 NC_003278.1 + 32261 0.81 0.013473
Target:  5'- cCGUCGGCGAcauCCUCGGCCGCAuGCCg -3'
miRNA:   3'- -GCGGCCGCUaccGGAGCCGGCGU-CGG- -5'
11941 5' -64.4 NC_003278.1 + 5909 0.76 0.035708
Target:  5'- gGCCuGGUGGUGauCCUCGGCCGCgAGCUg -3'
miRNA:   3'- gCGG-CCGCUACc-GGAGCCGGCG-UCGG- -5'
11941 5' -64.4 NC_003278.1 + 21453 0.75 0.043568
Target:  5'- gGCCGGCcuggcccagGGCCUCGGCgC-CGGCCa -3'
miRNA:   3'- gCGGCCGcua------CCGGAGCCG-GcGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 2358 0.74 0.051632
Target:  5'- cCGaaGGUGAaGGCCUCGGCa-CGGCCa -3'
miRNA:   3'- -GCggCCGCUaCCGGAGCCGgcGUCGG- -5'
11941 5' -64.4 NC_003278.1 + 32968 0.73 0.061139
Target:  5'- cCGCCGGCGc-GGUgUCGGCCagugcGCGGCa -3'
miRNA:   3'- -GCGGCCGCuaCCGgAGCCGG-----CGUCGg -5'
11941 5' -64.4 NC_003278.1 + 15355 0.72 0.076479
Target:  5'- cCGgUGGCGGUGGCCUgaCGGCaGCAGaCa -3'
miRNA:   3'- -GCgGCCGCUACCGGA--GCCGgCGUCgG- -5'
11941 5' -64.4 NC_003278.1 + 22017 0.72 0.076479
Target:  5'- aGCCGGCGc--GCCaguucgUCGGUCGCGGCg -3'
miRNA:   3'- gCGGCCGCuacCGG------AGCCGGCGUCGg -5'
11941 5' -64.4 NC_003278.1 + 20211 0.71 0.083134
Target:  5'- cCGCCGGCGucGGCCgcgaguaCGGCCagAGCCu -3'
miRNA:   3'- -GCGGCCGCuaCCGGa------GCCGGcgUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.