Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11942 | 3' | -58 | NC_003278.1 | + | 36 | 1.08 | 0.000296 |
Target: 5'- aUGAGCCGAUGCGGCCAGGAAACGCCAu -3' miRNA: 3'- -ACUCGGCUACGCCGGUCCUUUGCGGU- -5' |
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11942 | 3' | -58 | NC_003278.1 | + | 2561 | 0.66 | 0.432879 |
Target: 5'- -uGGCCGGuguugucguUGCGGCCGGcGGuauaggugaacuGGCGCCc -3' miRNA: 3'- acUCGGCU---------ACGCCGGUC-CU------------UUGCGGu -5' |
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11942 | 3' | -58 | NC_003278.1 | + | 4798 | 0.7 | 0.219863 |
Target: 5'- gGAGUCGGUGaUGGCCAGGc--CGaCCAa -3' miRNA: 3'- aCUCGGCUAC-GCCGGUCCuuuGC-GGU- -5' |
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11942 | 3' | -58 | NC_003278.1 | + | 4967 | 0.67 | 0.376283 |
Target: 5'- -aAGCCGAguuCGGCCAGGucGGCggGCCGu -3' miRNA: 3'- acUCGGCUac-GCCGGUCCu-UUG--CGGU- -5' |
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11942 | 3' | -58 | NC_003278.1 | + | 7022 | 0.72 | 0.181611 |
Target: 5'- cGAGCCGgcGgGGCgCGGGguACGCUc -3' miRNA: 3'- aCUCGGCuaCgCCG-GUCCuuUGCGGu -5' |
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11942 | 3' | -58 | NC_003278.1 | + | 7252 | 0.67 | 0.341428 |
Target: 5'- uUGAGaaGAUcGCGGCCGGcu-AUGCCGa -3' miRNA: 3'- -ACUCggCUA-CGCCGGUCcuuUGCGGU- -5' |
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11942 | 3' | -58 | NC_003278.1 | + | 7879 | 0.67 | 0.341428 |
Target: 5'- gGGGCCGugguCGGCCAGGccgugguuCGCCu -3' miRNA: 3'- aCUCGGCuac-GCCGGUCCuuu-----GCGGu -5' |
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11942 | 3' | -58 | NC_003278.1 | + | 8113 | 0.66 | 0.403955 |
Target: 5'- cGuGCCG--GUGGCCAGccAGGCGCCGa -3' miRNA: 3'- aCuCGGCuaCGCCGGUCc-UUUGCGGU- -5' |
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11942 | 3' | -58 | NC_003278.1 | + | 8716 | 0.67 | 0.385364 |
Target: 5'- cGGcGCCGAaGUGGCCguccucguagAGGuuGGCGCCGg -3' miRNA: 3'- aCU-CGGCUaCGCCGG----------UCCu-UUGCGGU- -5' |
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11942 | 3' | -58 | NC_003278.1 | + | 8806 | 0.77 | 0.074471 |
Target: 5'- --cGCCGAggGCGGCCAGGGucuucgggccagcGAUGCCAu -3' miRNA: 3'- acuCGGCUa-CGCCGGUCCU-------------UUGCGGU- -5' |
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11942 | 3' | -58 | NC_003278.1 | + | 8870 | 0.67 | 0.385364 |
Target: 5'- cGAGUCGAa-CGGCCAGGGguuccugggcAACGgCAa -3' miRNA: 3'- aCUCGGCUacGCCGGUCCU----------UUGCgGU- -5' |
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11942 | 3' | -58 | NC_003278.1 | + | 9379 | 0.66 | 0.413461 |
Target: 5'- gUGAGCCuucUGC-GCCAGGuguuguacAGCGCCGc -3' miRNA: 3'- -ACUCGGcu-ACGcCGGUCCu-------UUGCGGU- -5' |
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11942 | 3' | -58 | NC_003278.1 | + | 9488 | 0.66 | 0.413461 |
Target: 5'- -aGGCCGAguUGGCgAGGAAA-GCCAg -3' miRNA: 3'- acUCGGCUacGCCGgUCCUUUgCGGU- -5' |
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11942 | 3' | -58 | NC_003278.1 | + | 13051 | 0.66 | 0.432879 |
Target: 5'- cGAGCgGgcGCagauGGCCuGGGAAgGCCu -3' miRNA: 3'- aCUCGgCuaCG----CCGGuCCUUUgCGGu -5' |
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11942 | 3' | -58 | NC_003278.1 | + | 13201 | 0.66 | 0.413461 |
Target: 5'- aUGGGCUGA--CGGCCgAGGcauCGCCGa -3' miRNA: 3'- -ACUCGGCUacGCCGG-UCCuuuGCGGU- -5' |
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11942 | 3' | -58 | NC_003278.1 | + | 13395 | 0.82 | 0.031459 |
Target: 5'- cGGGCCGAUGgUGGCCAGGuaGAGCGUCGc -3' miRNA: 3'- aCUCGGCUAC-GCCGGUCC--UUUGCGGU- -5' |
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11942 | 3' | -58 | NC_003278.1 | + | 13894 | 0.66 | 0.390882 |
Target: 5'- cGAGCCGAcgggcucgaccacGCGGCgCAGG--GCGCuCAa -3' miRNA: 3'- aCUCGGCUa------------CGCCG-GUCCuuUGCG-GU- -5' |
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11942 | 3' | -58 | NC_003278.1 | + | 18991 | 0.77 | 0.079212 |
Target: 5'- -cGGCCGAccuccuugccUGCGGCCAGGugauCGCCGg -3' miRNA: 3'- acUCGGCU----------ACGCCGGUCCuuu-GCGGU- -5' |
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11942 | 3' | -58 | NC_003278.1 | + | 19171 | 0.7 | 0.225857 |
Target: 5'- aGAGCCGGUccauaugguccgGCGcCCAGuGAAACGUCAc -3' miRNA: 3'- aCUCGGCUA------------CGCcGGUC-CUUUGCGGU- -5' |
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11942 | 3' | -58 | NC_003278.1 | + | 19798 | 0.67 | 0.349919 |
Target: 5'- --uGCCGGUGcCGGCCAgcgcGGcAGCGCUc -3' miRNA: 3'- acuCGGCUAC-GCCGGU----CCuUUGCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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