miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11942 3' -58 NC_003278.1 + 36 1.08 0.000296
Target:  5'- aUGAGCCGAUGCGGCCAGGAAACGCCAu -3'
miRNA:   3'- -ACUCGGCUACGCCGGUCCUUUGCGGU- -5'
11942 3' -58 NC_003278.1 + 29705 0.66 0.442786
Target:  5'- -cGGCCGG-GCGGaCgAGGAAG-GCCAg -3'
miRNA:   3'- acUCGGCUaCGCC-GgUCCUUUgCGGU- -5'
11942 3' -58 NC_003278.1 + 13051 0.66 0.432879
Target:  5'- cGAGCgGgcGCagauGGCCuGGGAAgGCCu -3'
miRNA:   3'- aCUCGgCuaCG----CCGGuCCUUUgCGGu -5'
11942 3' -58 NC_003278.1 + 2561 0.66 0.432879
Target:  5'- -uGGCCGGuguugucguUGCGGCCGGcGGuauaggugaacuGGCGCCc -3'
miRNA:   3'- acUCGGCU---------ACGCCGGUC-CU------------UUGCGGu -5'
11942 3' -58 NC_003278.1 + 9488 0.66 0.413461
Target:  5'- -aGGCCGAguUGGCgAGGAAA-GCCAg -3'
miRNA:   3'- acUCGGCUacGCCGgUCCUUUgCGGU- -5'
11942 3' -58 NC_003278.1 + 9379 0.66 0.413461
Target:  5'- gUGAGCCuucUGC-GCCAGGuguuguacAGCGCCGc -3'
miRNA:   3'- -ACUCGGcu-ACGcCGGUCCu-------UUGCGGU- -5'
11942 3' -58 NC_003278.1 + 35518 0.66 0.394589
Target:  5'- aGAGCgGAggcGUGGCgGGGGGACGaCU- -3'
miRNA:   3'- aCUCGgCUa--CGCCGgUCCUUUGC-GGu -5'
11942 3' -58 NC_003278.1 + 8870 0.67 0.385364
Target:  5'- cGAGUCGAa-CGGCCAGGGguuccugggcAACGgCAa -3'
miRNA:   3'- aCUCGGCUacGCCGGUCCU----------UUGCgGU- -5'
11942 3' -58 NC_003278.1 + 4967 0.67 0.376283
Target:  5'- -aAGCCGAguuCGGCCAGGucGGCggGCCGu -3'
miRNA:   3'- acUCGGCUac-GCCGGUCCu-UUG--CGGU- -5'
11942 3' -58 NC_003278.1 + 32154 0.67 0.365578
Target:  5'- cGAGCUGG-GCGGUCuggcccagucgcGGAAGCGCUu -3'
miRNA:   3'- aCUCGGCUaCGCCGGu-----------CCUUUGCGGu -5'
11942 3' -58 NC_003278.1 + 27502 0.67 0.358559
Target:  5'- aGAGCCGAUcUGGCUGGGcaucgacuGGgGCCAg -3'
miRNA:   3'- aCUCGGCUAcGCCGGUCCu-------UUgCGGU- -5'
11942 3' -58 NC_003278.1 + 18991 0.77 0.079212
Target:  5'- -cGGCCGAccuccuugccUGCGGCCAGGugauCGCCGg -3'
miRNA:   3'- acUCGGCU----------ACGCCGGUCCuuu-GCGGU- -5'
11942 3' -58 NC_003278.1 + 29209 0.73 0.141162
Target:  5'- -aGGUCGcgGCGGCCAGcgaguucaaGAAGCGCCu -3'
miRNA:   3'- acUCGGCuaCGCCGGUC---------CUUUGCGGu -5'
11942 3' -58 NC_003278.1 + 33211 0.7 0.238263
Target:  5'- --cGCCGGcUGCGGCCgAGGccauCGCCGg -3'
miRNA:   3'- acuCGGCU-ACGCCGG-UCCuuu-GCGGU- -5'
11942 3' -58 NC_003278.1 + 26381 0.7 0.251233
Target:  5'- aUGGGCCGAaagaaaCGGCCuAGGAGaaagcaccgucuACGCCGu -3'
miRNA:   3'- -ACUCGGCUac----GCCGG-UCCUU------------UGCGGU- -5'
11942 3' -58 NC_003278.1 + 31544 0.69 0.271773
Target:  5'- -uGGCCaaccugGCGGCCAGGaAAACGCa- -3'
miRNA:   3'- acUCGGcua---CGCCGGUCC-UUUGCGgu -5'
11942 3' -58 NC_003278.1 + 28343 0.68 0.308967
Target:  5'- --cGCUGAagaaagGCGGCUAcuGGGAACGCCu -3'
miRNA:   3'- acuCGGCUa-----CGCCGGU--CCUUUGCGGu -5'
11942 3' -58 NC_003278.1 + 7252 0.67 0.341428
Target:  5'- uUGAGaaGAUcGCGGCCGGcu-AUGCCGa -3'
miRNA:   3'- -ACUCggCUA-CGCCGGUCcuuUGCGGU- -5'
11942 3' -58 NC_003278.1 + 13395 0.82 0.031459
Target:  5'- cGGGCCGAUGgUGGCCAGGuaGAGCGUCGc -3'
miRNA:   3'- aCUCGGCUAC-GCCGGUCC--UUUGCGGU- -5'
11942 3' -58 NC_003278.1 + 13201 0.66 0.413461
Target:  5'- aUGGGCUGA--CGGCCgAGGcauCGCCGa -3'
miRNA:   3'- -ACUCGGCUacGCCGG-UCCuuuGCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.