Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11942 | 5' | -49.9 | NC_003278.1 | + | 71 | 1.14 | 0.000847 |
Target: 5'- uGGCGGCAAGCUCUAAAAGCACAACCCc -3' miRNA: 3'- -CCGCCGUUCGAGAUUUUCGUGUUGGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 2274 | 0.66 | 0.87224 |
Target: 5'- aGCGGC-GGCUCguac--CACcGCCCg -3' miRNA: 3'- cCGCCGuUCGAGauuuucGUGuUGGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 2734 | 0.7 | 0.660549 |
Target: 5'- --gGGCGAGUagCUGAAGGUGCGcACCCc -3' miRNA: 3'- ccgCCGUUCGa-GAUUUUCGUGU-UGGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 2841 | 0.7 | 0.636879 |
Target: 5'- -cCGGCAugGGCUCUGgcGucGCGCAGCUg -3' miRNA: 3'- ccGCCGU--UCGAGAU--UuuCGUGUUGGg -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 2963 | 0.73 | 0.464672 |
Target: 5'- gGGCGGCAAGUUCcgcgugcuGGAGCGCcAUCa -3' miRNA: 3'- -CCGCCGUUCGAGau------UUUCGUGuUGGg -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 3308 | 0.73 | 0.486473 |
Target: 5'- cGGCGGCcGGCUUgcccuuguuGAAGCGCucGCCa -3' miRNA: 3'- -CCGCCGuUCGAGau-------UUUCGUGu-UGGg -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 3626 | 0.73 | 0.464672 |
Target: 5'- uGCGGUAGGUgUCgaacuGAAGgGCGACCCg -3' miRNA: 3'- cCGCCGUUCG-AGau---UUUCgUGUUGGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 4372 | 0.66 | 0.841843 |
Target: 5'- aGgGGCAuGUUCgggacgcgcGCGCGGCCCa -3' miRNA: 3'- cCgCCGUuCGAGauuuu----CGUGUUGGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 4982 | 0.73 | 0.475511 |
Target: 5'- aGGuCGGCGGGCcgucgaagcgaUCgccGAGCACAGCCg -3' miRNA: 3'- -CC-GCCGUUCG-----------AGauuUUCGUGUUGGg -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 5038 | 0.68 | 0.774853 |
Target: 5'- -uCGGCGAGCagaAGAAGCA-GACCCa -3' miRNA: 3'- ccGCCGUUCGagaUUUUCGUgUUGGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 6077 | 0.67 | 0.826493 |
Target: 5'- cGGCGGCAGGC-CgcccauGCGCuuCUg -3' miRNA: 3'- -CCGCCGUUCGaGauuuu-CGUGuuGGg -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 6313 | 0.68 | 0.768335 |
Target: 5'- cGGCGGCcacugccccgcaccaGGGCaugGAAGGCGCGaacGCCUa -3' miRNA: 3'- -CCGCCG---------------UUCGagaUUUUCGUGU---UGGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 6435 | 0.66 | 0.845581 |
Target: 5'- aGGCGGCu-GCgaucCUGAuacagcugggcGAGCuGCAGCUCa -3' miRNA: 3'- -CCGCCGuuCGa---GAUU-----------UUCG-UGUUGGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 6491 | 0.69 | 0.730386 |
Target: 5'- -cCGGCAgcAGCUCgaccuuGAGCGCuGCCUu -3' miRNA: 3'- ccGCCGU--UCGAGauu---UUCGUGuUGGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 6847 | 0.66 | 0.880561 |
Target: 5'- -cCGGCAucgaucuGCUC-AAgcGCGCGAUCCa -3' miRNA: 3'- ccGCCGUu------CGAGaUUuuCGUGUUGGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 7330 | 0.69 | 0.730386 |
Target: 5'- cGGCaccugGGCGAGUUC----GGCAUAGCCg -3' miRNA: 3'- -CCG-----CCGUUCGAGauuuUCGUGUUGGg -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 8165 | 0.66 | 0.86363 |
Target: 5'- aGGuCGGCAggaucAGCgacagcAGGCGCGACCa -3' miRNA: 3'- -CC-GCCGU-----UCGagauu-UUCGUGUUGGg -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 8645 | 0.66 | 0.880561 |
Target: 5'- cGGCGcCAAcCUCUAcGAGgACGGCCa -3' miRNA: 3'- -CCGCcGUUcGAGAUuUUCgUGUUGGg -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 8768 | 0.65 | 0.885413 |
Target: 5'- cGGCGGCGcugacuGCUCgcaccugcuGCAgAACgCCg -3' miRNA: 3'- -CCGCCGUu-----CGAGauuuu----CGUgUUG-GG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 8800 | 0.67 | 0.803378 |
Target: 5'- gGGCGGcCAGGgUCUucGGGCcagcgaugccaucgGCGACCa -3' miRNA: 3'- -CCGCC-GUUCgAGAuuUUCG--------------UGUUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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