Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11942 | 5' | -49.9 | NC_003278.1 | + | 71 | 1.14 | 0.000847 |
Target: 5'- uGGCGGCAAGCUCUAAAAGCACAACCCc -3' miRNA: 3'- -CCGCCGUUCGAGAUUUUCGUGUUGGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 20751 | 0.84 | 0.100824 |
Target: 5'- cGGCGGCGAGCUC-----GCGCAGCCa -3' miRNA: 3'- -CCGCCGUUCGAGauuuuCGUGUUGGg -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 20742 | 0.81 | 0.17285 |
Target: 5'- -uCGGCGAGUUcCUGAAGGC-CAACCCg -3' miRNA: 3'- ccGCCGUUCGA-GAUUUUCGuGUUGGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 28608 | 0.79 | 0.229751 |
Target: 5'- uGGCGGCAAGCUgccgaaaCUGAucuGGGCGCuggacaacgAACCCg -3' miRNA: 3'- -CCGCCGUUCGA-------GAUU---UUCGUG---------UUGGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 14172 | 0.75 | 0.354966 |
Target: 5'- cGCGGCGAGCgaggCcgGGAAGaagugGCAGCCCa -3' miRNA: 3'- cCGCCGUUCGa---Ga-UUUUCg----UGUUGGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 29215 | 0.75 | 0.364157 |
Target: 5'- cGGCGGCcagcGAGUUCaAGAAGCGCcuGCUCg -3' miRNA: 3'- -CCGCCG----UUCGAGaUUUUCGUGu-UGGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 19782 | 0.75 | 0.392705 |
Target: 5'- cGCGGCAGcGCUCUGGAuGcCGCGGCUg -3' miRNA: 3'- cCGCCGUU-CGAGAUUUuC-GUGUUGGg -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 31365 | 0.75 | 0.392705 |
Target: 5'- cGGCGGCGccaaGGCU-----AGCACAACCa -3' miRNA: 3'- -CCGCCGU----UCGAgauuuUCGUGUUGGg -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 28672 | 0.74 | 0.402539 |
Target: 5'- cGGCGGUggGUgaccGAGGCGCGcGCCCu -3' miRNA: 3'- -CCGCCGuuCGagauUUUCGUGU-UGGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 26770 | 0.74 | 0.416566 |
Target: 5'- cGGCGGCAuGUUCgugcagaugcccGAGC-CAACCCa -3' miRNA: 3'- -CCGCCGUuCGAGauu---------UUCGuGUUGGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 2963 | 0.73 | 0.464672 |
Target: 5'- gGGCGGCAAGUUCcgcgugcuGGAGCGCcAUCa -3' miRNA: 3'- -CCGCCGUUCGAGau------UUUCGUGuUGGg -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 28063 | 0.73 | 0.464672 |
Target: 5'- uGCGGCAaaaaggAGCUCUAcacccuGGUcgACAGCCCc -3' miRNA: 3'- cCGCCGU------UCGAGAUuu----UCG--UGUUGGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 3626 | 0.73 | 0.464672 |
Target: 5'- uGCGGUAGGUgUCgaacuGAAGgGCGACCCg -3' miRNA: 3'- cCGCCGUUCG-AGau---UUUCgUGUUGGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 4982 | 0.73 | 0.475511 |
Target: 5'- aGGuCGGCGGGCcgucgaagcgaUCgccGAGCACAGCCg -3' miRNA: 3'- -CC-GCCGUUCG-----------AGauuUUCGUGUUGGg -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 23330 | 0.73 | 0.486473 |
Target: 5'- cGGCGGCAAuGUgc----AGCACAGCCUc -3' miRNA: 3'- -CCGCCGUU-CGagauuuUCGUGUUGGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 3308 | 0.73 | 0.486473 |
Target: 5'- cGGCGGCcGGCUUgcccuuguuGAAGCGCucGCCa -3' miRNA: 3'- -CCGCCGuUCGAGau-------UUUCGUGu-UGGg -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 17342 | 0.72 | 0.520046 |
Target: 5'- uGGCGGCAAGC----AAGGCcuuCAugCCg -3' miRNA: 3'- -CCGCCGUUCGagauUUUCGu--GUugGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 30366 | 0.72 | 0.531441 |
Target: 5'- aGGUGGcCGAGUUCUGGGAGgucUACGACUa -3' miRNA: 3'- -CCGCC-GUUCGAGAUUUUC---GUGUUGGg -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 23363 | 0.71 | 0.58252 |
Target: 5'- cGGCGGUuacaucaccagccugGAGCUg-GAAAGCAagcuGCCCg -3' miRNA: 3'- -CCGCCG---------------UUCGAgaUUUUCGUgu--UGGG- -5' |
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11942 | 5' | -49.9 | NC_003278.1 | + | 12993 | 0.71 | 0.601367 |
Target: 5'- cGCGGCGAGCUggucGAGguCAgcGCCCu -3' miRNA: 3'- cCGCCGUUCGAgauuUUCguGU--UGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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