miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11942 5' -49.9 NC_003278.1 + 71 1.14 0.000847
Target:  5'- uGGCGGCAAGCUCUAAAAGCACAACCCc -3'
miRNA:   3'- -CCGCCGUUCGAGAUUUUCGUGUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 2274 0.66 0.87224
Target:  5'- aGCGGC-GGCUCguac--CACcGCCCg -3'
miRNA:   3'- cCGCCGuUCGAGauuuucGUGuUGGG- -5'
11942 5' -49.9 NC_003278.1 + 2734 0.7 0.660549
Target:  5'- --gGGCGAGUagCUGAAGGUGCGcACCCc -3'
miRNA:   3'- ccgCCGUUCGa-GAUUUUCGUGU-UGGG- -5'
11942 5' -49.9 NC_003278.1 + 2841 0.7 0.636879
Target:  5'- -cCGGCAugGGCUCUGgcGucGCGCAGCUg -3'
miRNA:   3'- ccGCCGU--UCGAGAU--UuuCGUGUUGGg -5'
11942 5' -49.9 NC_003278.1 + 2963 0.73 0.464672
Target:  5'- gGGCGGCAAGUUCcgcgugcuGGAGCGCcAUCa -3'
miRNA:   3'- -CCGCCGUUCGAGau------UUUCGUGuUGGg -5'
11942 5' -49.9 NC_003278.1 + 3308 0.73 0.486473
Target:  5'- cGGCGGCcGGCUUgcccuuguuGAAGCGCucGCCa -3'
miRNA:   3'- -CCGCCGuUCGAGau-------UUUCGUGu-UGGg -5'
11942 5' -49.9 NC_003278.1 + 3626 0.73 0.464672
Target:  5'- uGCGGUAGGUgUCgaacuGAAGgGCGACCCg -3'
miRNA:   3'- cCGCCGUUCG-AGau---UUUCgUGUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 4372 0.66 0.841843
Target:  5'- aGgGGCAuGUUCgggacgcgcGCGCGGCCCa -3'
miRNA:   3'- cCgCCGUuCGAGauuuu----CGUGUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 4982 0.73 0.475511
Target:  5'- aGGuCGGCGGGCcgucgaagcgaUCgccGAGCACAGCCg -3'
miRNA:   3'- -CC-GCCGUUCG-----------AGauuUUCGUGUUGGg -5'
11942 5' -49.9 NC_003278.1 + 5038 0.68 0.774853
Target:  5'- -uCGGCGAGCagaAGAAGCA-GACCCa -3'
miRNA:   3'- ccGCCGUUCGagaUUUUCGUgUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 6077 0.67 0.826493
Target:  5'- cGGCGGCAGGC-CgcccauGCGCuuCUg -3'
miRNA:   3'- -CCGCCGUUCGaGauuuu-CGUGuuGGg -5'
11942 5' -49.9 NC_003278.1 + 6313 0.68 0.768335
Target:  5'- cGGCGGCcacugccccgcaccaGGGCaugGAAGGCGCGaacGCCUa -3'
miRNA:   3'- -CCGCCG---------------UUCGagaUUUUCGUGU---UGGG- -5'
11942 5' -49.9 NC_003278.1 + 6435 0.66 0.845581
Target:  5'- aGGCGGCu-GCgaucCUGAuacagcugggcGAGCuGCAGCUCa -3'
miRNA:   3'- -CCGCCGuuCGa---GAUU-----------UUCG-UGUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 6491 0.69 0.730386
Target:  5'- -cCGGCAgcAGCUCgaccuuGAGCGCuGCCUu -3'
miRNA:   3'- ccGCCGU--UCGAGauu---UUCGUGuUGGG- -5'
11942 5' -49.9 NC_003278.1 + 6847 0.66 0.880561
Target:  5'- -cCGGCAucgaucuGCUC-AAgcGCGCGAUCCa -3'
miRNA:   3'- ccGCCGUu------CGAGaUUuuCGUGUUGGG- -5'
11942 5' -49.9 NC_003278.1 + 7330 0.69 0.730386
Target:  5'- cGGCaccugGGCGAGUUC----GGCAUAGCCg -3'
miRNA:   3'- -CCG-----CCGUUCGAGauuuUCGUGUUGGg -5'
11942 5' -49.9 NC_003278.1 + 8165 0.66 0.86363
Target:  5'- aGGuCGGCAggaucAGCgacagcAGGCGCGACCa -3'
miRNA:   3'- -CC-GCCGU-----UCGagauu-UUCGUGUUGGg -5'
11942 5' -49.9 NC_003278.1 + 8645 0.66 0.880561
Target:  5'- cGGCGcCAAcCUCUAcGAGgACGGCCa -3'
miRNA:   3'- -CCGCcGUUcGAGAUuUUCgUGUUGGg -5'
11942 5' -49.9 NC_003278.1 + 8768 0.65 0.885413
Target:  5'- cGGCGGCGcugacuGCUCgcaccugcuGCAgAACgCCg -3'
miRNA:   3'- -CCGCCGUu-----CGAGauuuu----CGUgUUG-GG- -5'
11942 5' -49.9 NC_003278.1 + 8800 0.67 0.803378
Target:  5'- gGGCGGcCAGGgUCUucGGGCcagcgaugccaucgGCGACCa -3'
miRNA:   3'- -CCGCC-GUUCgAGAuuUUCG--------------UGUUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.