miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11946 5' -61.6 NC_003278.1 + 5505 0.69 0.174732
Target:  5'- gGUACgGCUGGcgauGGUGCCGCUGaCGCCg -3'
miRNA:   3'- -CAUGgCGGCCu---CCGCGGUGGUgGUGG- -5'
11946 5' -61.6 NC_003278.1 + 6105 0.7 0.161184
Target:  5'- cUACUGgcagaUCGGcGGuCGCCGCCGCUACCu -3'
miRNA:   3'- cAUGGC-----GGCCuCC-GCGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 21667 0.7 0.156882
Target:  5'- gGUGCC-CUGGugcucGGCGCCAgCGCC-CCg -3'
miRNA:   3'- -CAUGGcGGCCu----CCGCGGUgGUGGuGG- -5'
11946 5' -61.6 NC_003278.1 + 23405 0.7 0.156882
Target:  5'- -aACCGCCGucGGCGCUgagGCUgugcugcacauuGCCGCCg -3'
miRNA:   3'- caUGGCGGCcuCCGCGG---UGG------------UGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 31687 0.7 0.148589
Target:  5'- uUGaaGCCuGcGGCGCCGCCGCCcagGCCg -3'
miRNA:   3'- cAUggCGGcCuCCGCGGUGGUGG---UGG- -5'
11946 5' -61.6 NC_003278.1 + 8935 0.7 0.148589
Target:  5'- uGUACCGCCGucu-CGCCGCCcacgaucaggucACCGCCg -3'
miRNA:   3'- -CAUGGCGGCcuccGCGGUGG------------UGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 6479 0.7 0.148589
Target:  5'- cGUGCUgcagGCCGGcaaGGGCGCCcaggacgaggugGUCACCACCg -3'
miRNA:   3'- -CAUGG----CGGCC---UCCGCGG------------UGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 14037 0.7 0.148589
Target:  5'- ---aCGCCGGAcauccuGGC-CCGCCACgGCCu -3'
miRNA:   3'- caugGCGGCCU------CCGcGGUGGUGgUGG- -5'
11946 5' -61.6 NC_003278.1 + 14691 0.7 0.144594
Target:  5'- -aGCCuCCGGcguGGGUGCCGgCACCuACCg -3'
miRNA:   3'- caUGGcGGCC---UCCGCGGUgGUGG-UGG- -5'
11946 5' -61.6 NC_003278.1 + 9072 0.71 0.140697
Target:  5'- gGUGCCGCCGGcauagccgcccGGGCGaggguUCACCAgCGCg -3'
miRNA:   3'- -CAUGGCGGCC-----------UCCGC-----GGUGGUgGUGg -5'
11946 5' -61.6 NC_003278.1 + 10368 0.71 0.140697
Target:  5'- -aGCUGCUGGccgaguGGaCGCCGCCGaagcCCACCg -3'
miRNA:   3'- caUGGCGGCCu-----CC-GCGGUGGU----GGUGG- -5'
11946 5' -61.6 NC_003278.1 + 16727 0.71 0.136897
Target:  5'- aGUACCaggcGCUGcAGGCG-UACCGCCGCCa -3'
miRNA:   3'- -CAUGG----CGGCcUCCGCgGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 20229 0.71 0.136522
Target:  5'- aGUACgGCCagagccuGGAGaCgGUCACCACCGCCa -3'
miRNA:   3'- -CAUGgCGG-------CCUCcG-CGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 7830 0.71 0.133191
Target:  5'- ---aCGCCGGcGGUGCgACCguaguGCCGCCa -3'
miRNA:   3'- caugGCGGCCuCCGCGgUGG-----UGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 2522 0.71 0.133191
Target:  5'- -gGCCGCaUGGAGauuuucggaugaGCaaacgucgcaGCCACCGCCGCCa -3'
miRNA:   3'- caUGGCG-GCCUC------------CG----------CGGUGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 33206 0.71 0.126055
Target:  5'- gGUuCCGCCGGcuGCgGCCgagGCCAUCGCCg -3'
miRNA:   3'- -CAuGGCGGCCucCG-CGG---UGGUGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 23166 0.71 0.122283
Target:  5'- -gACCGCCaGAGcgcccugcGCGCCGCCcgcgccgaguggaACCGCCu -3'
miRNA:   3'- caUGGCGGcCUC--------CGCGGUGG-------------UGGUGG- -5'
11946 5' -61.6 NC_003278.1 + 15964 0.72 0.116013
Target:  5'- -gACCGCCGGcGGCGUaGCCACgAUa -3'
miRNA:   3'- caUGGCGGCCuCCGCGgUGGUGgUGg -5'
11946 5' -61.6 NC_003278.1 + 29826 0.72 0.109739
Target:  5'- -aGCCgcGCCGGcGGCGCCGCCAaguCCu -3'
miRNA:   3'- caUGG--CGGCCuCCGCGGUGGUgguGG- -5'
11946 5' -61.6 NC_003278.1 + 15416 0.73 0.100921
Target:  5'- cUGCUGCCGucaG-GCCACCGCCACCg -3'
miRNA:   3'- cAUGGCGGCcucCgCGGUGGUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.