miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11951 5' -61.4 NC_003278.1 + 10474 0.71 0.152047
Target:  5'- -aCUGGgCAggGCCGAUUCUCCgCGCCc -3'
miRNA:   3'- cgGACCgGUagUGGCUGAGGGG-GCGG- -5'
11951 5' -61.4 NC_003278.1 + 11893 0.71 0.142448
Target:  5'- cGCCgcgGGCCggCGCCGACcgcgaauggaacgCCCCCaCCc -3'
miRNA:   3'- -CGGa--CCGGuaGUGGCUGa------------GGGGGcGG- -5'
11951 5' -61.4 NC_003278.1 + 11981 0.66 0.28922
Target:  5'- gGCgUGGUCcUgACCGGCUUguucagugaccugaUCCCGCCc -3'
miRNA:   3'- -CGgACCGGuAgUGGCUGAG--------------GGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 12538 0.7 0.164869
Target:  5'- cGCCUGaGCCGuguccagaUCACCGGCcagaaCCUgGCCg -3'
miRNA:   3'- -CGGAC-CGGU--------AGUGGCUGag---GGGgCGG- -5'
11951 5' -61.4 NC_003278.1 + 13147 0.7 0.16049
Target:  5'- uGCCUcGGCCGUCAgCCca-UCgCCUGCCg -3'
miRNA:   3'- -CGGA-CCGGUAGU-GGcugAGgGGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 13231 0.68 0.238236
Target:  5'- -gCUGGCCAUCGUCGACgCCUaccucaacgaCGCCg -3'
miRNA:   3'- cgGACCGGUAGUGGCUGaGGGg---------GCGG- -5'
11951 5' -61.4 NC_003278.1 + 13341 0.67 0.257147
Target:  5'- aCCUGGCCAcCAUCGGCccggagUCCgaGCCg -3'
miRNA:   3'- cGGACCGGUaGUGGCUGa-----GGGggCGG- -5'
11951 5' -61.4 NC_003278.1 + 13618 0.67 0.257147
Target:  5'- cGCCUGGCC---GCCGAagCCCUgGCg -3'
miRNA:   3'- -CGGACCGGuagUGGCUgaGGGGgCGg -5'
11951 5' -61.4 NC_003278.1 + 14019 0.69 0.183472
Target:  5'- cGCCUGGaCCugcgcaucaCGCCGGacaUCCuggCCCGCCa -3'
miRNA:   3'- -CGGACC-GGua-------GUGGCUg--AGG---GGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 14687 0.67 0.250711
Target:  5'- cGCCgaccaGGCCGUUGCCGGCcagCaCCuuGCg -3'
miRNA:   3'- -CGGa----CCGGUAGUGGCUGa--G-GGggCGg -5'
11951 5' -61.4 NC_003278.1 + 17037 0.67 0.27935
Target:  5'- gGCCUGGUagccaccgccgaagaCGCCGACgCCaCCGCCu -3'
miRNA:   3'- -CGGACCGgua------------GUGGCUGaGGgGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 17157 0.68 0.226285
Target:  5'- aGCCUGcaaGCaAUCGCCGACcaggCCaacgCCGCCa -3'
miRNA:   3'- -CGGAC---CGgUAGUGGCUGa---GGg---GGCGG- -5'
11951 5' -61.4 NC_003278.1 + 18359 0.66 0.298629
Target:  5'- gGCCUugaccgGGCCGUUcauGCCG---CCCCCGCg -3'
miRNA:   3'- -CGGA------CCGGUAG---UGGCugaGGGGGCGg -5'
11951 5' -61.4 NC_003278.1 + 18673 0.66 0.329057
Target:  5'- cGCaaGGCCAUCGgcCUGuaaUCCcuuCCCGCCg -3'
miRNA:   3'- -CGgaCCGGUAGU--GGCug-AGG---GGGCGG- -5'
11951 5' -61.4 NC_003278.1 + 19327 0.66 0.313563
Target:  5'- cGCCcgGGCCGUCGCgucGCUgCCuuGCa -3'
miRNA:   3'- -CGGa-CCGGUAGUGgc-UGAgGGggCGg -5'
11951 5' -61.4 NC_003278.1 + 19432 0.7 0.178654
Target:  5'- aGCagaUGGCCGcCGCCGGCaaccCCaCCCGCg -3'
miRNA:   3'- -CGg--ACCGGUaGUGGCUGa---GG-GGGCGg -5'
11951 5' -61.4 NC_003278.1 + 19695 0.66 0.329057
Target:  5'- cGCCUGGCUGUUGauGGCgCCauuggCCGCCu -3'
miRNA:   3'- -CGGACCGGUAGUggCUGaGGg----GGCGG- -5'
11951 5' -61.4 NC_003278.1 + 20008 0.67 0.27727
Target:  5'- -aCUGGCCcUgGgCGACUUCCuuGUCg -3'
miRNA:   3'- cgGACCGGuAgUgGCUGAGGGggCGG- -5'
11951 5' -61.4 NC_003278.1 + 20171 0.67 0.263719
Target:  5'- aCCUGGuCCAUUuucucuGCCGgaaUCCCCauCGCCg -3'
miRNA:   3'- cGGACC-GGUAG------UGGCug-AGGGG--GCGG- -5'
11951 5' -61.4 NC_003278.1 + 20831 0.68 0.220502
Target:  5'- aGCCUuGCCAucacccUCGCCGGCaUUCUCgGCCc -3'
miRNA:   3'- -CGGAcCGGU------AGUGGCUG-AGGGGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.